Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00504 ATGAGTCAACGCGGTCTGATATTGCAGGAACCAGTACAGAGAGACAGGGAGGCGAGAACCCTTCTTGGTTTCTTGAGAGGGCAAATGGATGGTGTGGATGGAGTTACTGTTCGTCGGCGGAGTCTCAAGGAGCGGCTGGGATTCAAGAGAATGGGTTGCTGTGGGGCTACTTGGGGTTTCAGACCGACCACTTTAAGCGGAAGCCATGACGATGAACCCGCCGAAGAACAAGAACGGGTCGAAGAATTCAACCCGAGTCAACCACTGGTTGTTTCTGGTGCGGGATTGGATGCCCCGTCGGGAATGAATTTAGCAGCTGCTTTGGCAGCCGAGCGTCAGTATCGGGTGTCGGACGGAGGAAATGGTACCGGAGCCGTTACGGGGAGTGACGTGCCAAAAACCCCGTTACGTGTGTCGTTAATGAGGTTGCTGGAGGAAGCGGACGGAGTGGAGAGAGAGCCTGTAACGGTTATGACAGGGACGGAGAAAGAAGGGATGGGTAATGATATGGTGTGCTGCGTGTGCATGGAAAGGATGAAAGGCGCAGCTTTTATCCCATGTGGCCACACGTATTGCAGGGTGTGTTCGCGCGAGCTATGGCTGAATCGAGGTGCCTGTCCCCTTTGCAATCGTATGATAGTTGAGATTCTGGATATCTTCTGA 663 0.5339 MSQRGLILQEPVQRDREARTLLGFLRGQMDGVDGVTVRRRSLKERLGFKRMGCCGATWGFRPTTLSGSHDDEPAEEQERVEEFNPSQPLVVSGAGLDAPSGMNLAAALAAERQYRVSDGGNGTGAVTGSDVPKTPLRVSLMRLLEEADGVEREPVTVMTGTEKEGMGNDMVCCVCMERMKGAAFIPCGHTYCRVCSRELWLNRGACPLCNRMIVEILDIF* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00504 220 SUPERFAMILY RING/U-box 163 217 - -
Pte19g00504 220 CDD RING-HC 172 209 - -
Pte19g00504 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 219 IPR013083 -
Pte19g00504 220 ProSiteProfiles Zinc finger RING-type profile. 172 210 IPR001841 -
Pte19g00504 220 PANTHER OS01G0917900 PROTEIN 8 220 - -
Pte19g00504 220 Pfam Zinc finger, C3HC4 type (RING finger) 169 214 - -
Pte19g00504 220 SMART ring_2 172 209 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00504 Pte-Chr19 4069237 4070808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00504 21 221 C3H Transcription Factor Family AT4G22250 53.555 5.43e-61 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00504 - - pcin:129286609 245.743