LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte19g00498	ATGGAAGGTGGTGGTTCCAATGGCACTTGTTATATGATGGGGTTTGGAGAAAGTAGTAGTGGATTATGTCCAATGACGATGATGATGTCAATTCCTTTGCCGCTAGTGACTTCTCATCATGCCGGTCATGTCCATCATCCTCATCATCCCCATCAAAATAATGAAGAAATGAATAGTTCCTTACTTCCGAGTCCTTTTTCAAATAATCACGAACACAACAATCACAACAGCACTGCCAGAACTACTTTTACCCTTGACTACAACCACGAGAACAACGGCAACAACAACCACAATGGTAGTACAGGCTTAGCCCCGTCCTTCATGGAGACCAACCACAAGAACCATGGTTGTTCATCTTCTTCATCTGTCAAGGCCAAGATTATGGCTCATCCGCAATATCATCGTCTCCTGGCCGCATATGCAAGTTGTCAAAAGGTTGGAGCACCGCCTGAAGTGGTGGCAAGGCTAGAAGAAGTATGCGCTTCTACGTCTGGTCAAGCTAGTACAGGTTGTTTGGGTGAAGATCCAGCTCTGGATCAGTTCATGGAAGCTTACTGTGAGATGCTGGTTAAGTACGAACAGGAGCTTTCAAAGCCTTTTAAGGAGGCCATGCACTTTCTTGAAAGAATCGAGTGTCAATTCAGAGCTCTCACAATTTCGTCTTCCGATTCTGCTTGCAATGAGGCTATGGATAGGGCTGATTCATCTGAAGATGGTATTGACGTGCACAACAACTTGGTAGATCCCCAGGTTGAAGATCGTGAACTTAAAACTCAGCTTCTGCGCAAATACAGTGGGTATTTGGGTAGTCTTAAACAGGAATTCATGAAGAAGAGAAAGAAAGGCAAGCTGCCTAAAGAAGCTAGACAACAATTGCTGGATTGGTGGGGCAGACACTACAAATGGCCTTACCCATCGGAATCACAGAAGCTGGCTCTTGCAGAATCGACAGGACTGGATCAGAAGCAAATCAACAACTGGTTCATTAATCAAAGGAAGCGACACTGGAAGCCTTCGGAAGACATGCAGTTTGTGGTGATGGACGCTGCACATCCCCATTATTACATGGACAATGTCTTGGGCAACCCATTTCCCATGGATCTCTCTTCTGCCCTCATGTGA	1122	0.4537	MEGGGSNGTCYMMGFGESSSGLCPMTMMMSIPLPLVTSHHAGHVHHPHHPHQNNEEMNSSLLPSPFSNNHEHNNHNSTARTTFTLDYNHENNGNNNHNGSTGLAPSFMETNHKNHGCSSSSSVKAKIMAHPQYHRLLAAYASCQKVGAPPEVVARLEEVCASTSGQASTGCLGEDPALDQFMEAYCEMLVKYEQELSKPFKEAMHFLERIECQFRALTISSSDSACNEAMDRADSSEDGIDVHNNLVDPQVEDRELKTQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWGRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYMDNVLGNPFPMDLSSALM*	374

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte19g00498	373	ProSitePatterns	'Homeobox' domain signature.	313	336	IPR017970	GO:0000981\|GO:0006355
	Pte19g00498	373	CDD	homeodomain	287	339	IPR001356	GO:0003677
	Pte19g00498	373	ProSiteProfiles	'Homeobox' domain profile.	275	338	IPR001356	GO:0003677
	Pte19g00498	373	FunFam	Homeobox protein knotted-1-like 2	280	342	-	-
	Pte19g00498	373	MobiDBLite	consensus disorder prediction	40	77	-	-
	Pte19g00498	373	Gene3D	-	280	342	-	-
	Pte19g00498	373	ProSiteProfiles	ELK domain profile.	255	275	IPR005539	GO:0003677
	Pte19g00498	373	SMART	ELK_2	255	276	IPR005539	GO:0003677
	Pte19g00498	373	MobiDBLite	consensus disorder prediction	86	105	-	-
	Pte19g00498	373	Pfam	Homeobox KN domain	295	334	IPR008422	GO:0003677\|GO:0006355
	Pte19g00498	373	SMART	HOX_1	277	342	IPR001356	GO:0003677
	Pte19g00498	373	MobiDBLite	consensus disorder prediction	54	77	-	-
	Pte19g00498	373	Pfam	ELK domain	255	276	IPR005539	GO:0003677
	Pte19g00498	373	Pfam	KNOX2 domain	172	218	IPR005541	GO:0003677\|GO:0005634
	Pte19g00498	373	SUPERFAMILY	Homeodomain-like	277	352	IPR009057	-
	Pte19g00498	373	SMART	KNOX1_2	121	165	IPR005540	GO:0003677\|GO:0005634
	Pte19g00498	373	SMART	KNOX2_2	168	219	IPR005541	GO:0003677\|GO:0005634
	Pte19g00498	373	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	48	344	-	-
	Pte19g00498	373	Pfam	KNOX1 domain	123	161	IPR005540	GO:0003677\|GO:0005634

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte19g00498	Pte-Chr19	4030042	4035311	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte19g00498	123	373	Homeobox Transcription Factor Family	AT1G62360	78.927	1.02e-132	383

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Pte19g00498		KNOX2	1.5e-21	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte19g00498	-		-	tcc:18597223	517.309