Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00497 ATGGCCAAAACAAAACAAGGAAGAAAAGACATGGAATCCTACACTATCAAAGGTACCAACAAGGTTGTTAGAGCTGGGGATTGTGTCCTCATGCATCCAGCGGATACCAGTAAGCCTCCGTACGTTGCTCGTGTAGAGAAGATTGAAACAGACTGTAGGAACAACGTGAAGGTCCGAGTGAGGTGGTATTATAGGCCAGAAGAGTCTATTGGTGGACGGAGGCAATTTCATGGAGCTAAGGAGCTGTTCCTGTCAGATCACTATGACGTCCAGAGTGCTCAGACCATTGAAGGAAAATGTATTGTGCATTCTTTCAAGAATTATACTAAACTTGAGAATGTTGGAGCTGAAGACTACTATTGTAGATTTGAGTACAAGGCTGCTACTGGGAGTTTCACTCCTGACAGGGTTGCTGTGTATTGTAAATGCGAGATGCCTTATAACCCAGATGATCTAATGGTTCAATGTGAAGGGTGCAAGGATTGGTACCATCCTGCTTGTGTGGCAATGAGCATTGAGCAAGCAAAGAAACTAGACCGTTTTGTGTGTGAGGAATGCACATCTAGTGCGGGTGTCAAGAAATCTCAAAATGCAACTGCTGGACTGGGATCTGATGACAAGGAAGAGCCGAAGCACAGAAGACACGACCATGGTTAG 657 0.449 MAKTKQGRKDMESYTIKGTNKVVRAGDCVLMHPADTSKPPYVARVEKIETDCRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAQTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGSFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVAMSIEQAKKLDRFVCEECTSSAGVKKSQNATAGLGSDDKEEPKHRRHDHG* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00497 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 202 IPR013083 -
Pte19g00497 218 PANTHER OS08G0421900 PROTEIN 1 202 - -
Pte19g00497 218 SUPERFAMILY FYVE/PHD zinc finger 130 191 IPR011011 -
Pte19g00497 218 FunFam Chromatin remodeling protein EBS 1 132 - -
Pte19g00497 218 SMART PHD_3 140 187 IPR001965 -
Pte19g00497 218 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Pte19g00497 218 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Pte19g00497 218 Pfam BAH domain 23 135 IPR001025 GO:0003682
Pte19g00497 218 CDD BAH_BAHCC1 22 156 - -
Pte19g00497 218 MobiDBLite consensus disorder prediction 204 218 - -
Pte19g00497 218 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Pte19g00497 218 FunFam Bromo-adjacent homology (BAH) domain-containing protein 133 203 - -
Pte19g00497 218 Gene3D - 1 130 IPR043151 -
Pte19g00497 218 MobiDBLite consensus disorder prediction 190 218 - -
Pte19g00497 218 SMART BAH_4 21 136 IPR001025 GO:0003682
Pte19g00497 218 Pfam PHD-finger 140 188 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00497 Pte-Chr19 4017607 4026159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00497 41 132 Core DNA Replication Machinery Family AT4G14700 31.183 1.08e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte19g00497 BAH 1.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00497 K25868 - gmx:100800993 385.571