Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00478 ATGTCTTGCTCCAATTTGACAATGTCGATGGCTTCAAAGCCTTCGTTTTCTGACGCCTATGGTCTATCCTTCCGCTCCTGTATTAACTCGTTTTCGCTGCCAACTCAAAACACTTCCTCCTCCAGAACCTCACGATCCACTGTACTCCCTATTCATTGTGGTCTCAGAGAACTTAGAGAGCGTATTGGCTCTGTGAAAAACACGAAGAAGATTACTGAGGCCATGAAGCTTGTTGCTGCAGCTAAAGTCAGAAGAGCGCAAGAAGCTGTTGTTAGCGGAAGACCCTTTTCACAAACTCTAGTGGAAGTGCTTTACAGCATCAACGAACAGATCCAAACTGAAGACGTAGACATCCCCCTTACCAAAGTCAGGCCTGTCAAGAAGGTTGCTTTGGTTGTTGTTACTGGTGATCGAGGCCTTTGTGGTGGCTACAACAACGCAGTCATAAGAAAGGCTGAGAATAGAATGGCTGAGTTGAAGGTACTGGGTCTTGAATTTACGGTCATCAGTGTTGGCAGAAAGGGCAATCAATATTTTATCCGTAGGCCTTACATTCCTGTTGATAAGTTTCTGGAAAACAACGCTCTCCCAACTGCAAAAGAAGCTCAGGCAATTGCAGATGATGTGTTTTCACTCTTTATTAGTGAAGAGGTTGACAAAGTTGAACTTTTGTACACAAAATTTGTATCTCTAGTGAAATCAAACCCAATCATCCACACCCTGCTTCCCGTTTCTCCCAAAGGAGAGATCTGTGATGTTAATGGAGTCTGTGTAGATGCTGCTGAAGATGAGCTCTTCAGGTTGACTACCAAGGAAGGAAAGCTAACTGTGGAAAGGGACACTTTCAGAGCCGAGACACAGGAATTCTCACCTATTCTGCAATTTGAGCAGGACCCTGTTCAGATTCTTGATGCTTTGCTGCCTCTGTATTTGAACAGTCAGATCCTGAGAGCATTGCAAGAATCTCTTGCCAGCGAGCTTGCTGCTAGGATGACTGCCATGAGCAGTGCATCTGATAATGCTACTGAGTTGGGGAAGTCACTGTCAATTCTCTACAATAGGCAGCGCCAGGCTAAAATCACTGGAGAAATATTGGAGATTGTTGCAGGAGCTGACTCTATGTCTTAG 1128 0.4477 MSCSNLTMSMASKPSFSDAYGLSFRSCINSFSLPTQNTSSSRTSRSTVLPIHCGLRELRERIGSVKNTKKITEAMKLVAAAKVRRAQEAVVSGRPFSQTLVEVLYSINEQIQTEDVDIPLTKVRPVKKVALVVVTGDRGLCGGYNNAVIRKAENRMAELKVLGLEFTVISVGRKGNQYFIRRPYIPVDKFLENNALPTAKEAQAIADDVFSLFISEEVDKVELLYTKFVSLVKSNPIIHTLLPVSPKGEICDVNGVCVDAAEDELFRLTTKEGKLTVERDTFRAETQEFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMTAMSSASDNATELGKSLSILYNRQRQAKITGEILEIVAGADSMS* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00478 375 ProSitePatterns ATP synthase gamma subunit signature. 360 373 IPR023632 -
Pte19g00478 375 CDD F1-ATPase_gamma 55 371 IPR000131 GO:0015986|GO:0045261|GO:0046933
Pte19g00478 375 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 54 373 IPR035968 GO:0015986|GO:0045261|GO:0046933
Pte19g00478 375 FunFam ATP synthase gamma chain, chloroplastic 271 374 - -
Pte19g00478 375 Pfam ATP synthase 55 373 IPR000131 GO:0015986|GO:0045261|GO:0046933
Pte19g00478 375 Gene3D ATP synthase, gamma subunit, helix hairpin domain 53 122 - -
Pte19g00478 375 Gene3D ATP synthase, gamma subunit, helix hairpin domain 268 374 - -
Pte19g00478 375 FunFam ATP synthase gamma chain, chloroplastic 122 245 - -
Pte19g00478 375 Hamap ATP synthase gamma chain [atpG]. 52 374 IPR000131 GO:0015986|GO:0045261|GO:0046933
Pte19g00478 375 Gene3D - 123 245 - -
Pte19g00478 375 PRINTS ATP synthase gamma subunit signature 321 340 IPR000131 GO:0015986|GO:0045261|GO:0046933
Pte19g00478 375 PRINTS ATP synthase gamma subunit signature 126 145 IPR000131 GO:0015986|GO:0045261|GO:0046933
Pte19g00478 375 PRINTS ATP synthase gamma subunit signature 352 373 IPR000131 GO:0015986|GO:0045261|GO:0046933
Pte19g00478 375 PRINTS ATP synthase gamma subunit signature 219 236 IPR000131 GO:0015986|GO:0045261|GO:0046933
Pte19g00478 375 FunFam ATP synthase gamma chain, chloroplastic 53 120 - -
Pte19g00478 375 PANTHER ATP SYNTHASE GAMMA CHAIN 5 374 IPR000131 GO:0015986|GO:0045261|GO:0046933
Pte19g00478 375 NCBIfam ATP synthase F1 subunit gamma 54 373 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00478 Pte-Chr19 3871980 3874088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00478 34 374 Primary Pumps ATPases AT1G15700 68.986 3.78e-172 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00478 K02115 - ming:122058724 579.326