Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00473 ATGATGCAGTCTGGAGGACCTGGAATGGCAGCATCGCAACCCTCTCAGCAGTACCAGCAGTACCAGTACCAGCAGCTCCAGCAGCCTTACATGATGATGCAGCCGCAGCCGCAGCAACAGCAGCAGATGCCAGGGTGGCCTCATGTCCCTCAACAACAGCTACAGTCCGGGGTACCTCAGCAGACTGTTCAACCCACCAGTACCGATGAGGTCCGTACCCTGTGGATCGGTGATTTGCAAAGCTGGATGACCGAGCGCTATCTTTATGATTGTTTCTCTCCTGCAGCTGAGGTTGCGAGCGTGAAAATCATCAGGAATAAGCAGACAGGTATTTCAGAGGGTTATGGATTTATCGAGTTTACTTCTCGTGGTGCTGCTGAAATGGTACTTCAAGCATACAATGGAGCTGTCATGCCACAGGCAGGAGTGAGTTACAGATTAAACTGGGCAAGTCTGAGTGCTGGAGAGAGACGACATGATGATTCCCCTGATTATACAATATTTGTGGGAGACTTGGCTGCAGATGTTAGTGATATCATGCTAGAACAGATCTTCAAGGGCCGTTATTCATCAGTTAAGGGTGCCAAGGTTGTGATTGATAGGCTTACTAATCGATCAAAGGGTTATGGATTTGTTAAGTTTGCAGATGAAAATGAACAAATTAGAGCCATGACTGAGATGAATGGTGTATTATGTTCAACCAGGCCTATGCGCATTGGCCCTGCAGCAAACAAGAATACAAGTGTCCAGCAGACAAGAGCTTCATATCAGAATCAAGGGATACCAACAGACAGTGATCCAAACAACACTACTGTATTTGTTGGCAACTTAGATCCTAATGTGACCGACGATCTCTTGAGGCAAGTTTTTGGCCGACATGGGGATGTGGTGCATGTGAAGATTCCAGCAGGCAAGCGGTGTGGATTTGTCCAGTTTGCTGACAGAAACTCTGCTGAGGAGGCACTGCAGGTGTTGAATGGAACCACGTTAGGTGCATCAAATGTCAGATTGTCATGGGGTCGTAGCCCTACCAACAAACAGCCTCAGGCAGATCAAAATCAGTGGAATGGTGGTGGATATTATGGATATCCTACTCAGGGATATGAGAACTATGGTTATGCTCCTGCTGCACAGGACCCCAACATGTATGGTGGTTATTCAGGGTATCCAAACTACCAGCCACCACAGCAACAGCAATCGGGATATAGCTAA 1212 0.4752 MMQSGGPGMAASQPSQQYQQYQYQQLQQPYMMMQPQPQQQQQMPGWPHVPQQQLQSGVPQQTVQPTSTDEVRTLWIGDLQSWMTERYLYDCFSPAAEVASVKIIRNKQTGISEGYGFIEFTSRGAAEMVLQAYNGAVMPQAGVSYRLNWASLSAGERRHDDSPDYTIFVGDLAADVSDIMLEQIFKGRYSSVKGAKVVIDRLTNRSKGYGFVKFADENEQIRAMTEMNGVLCSTRPMRIGPAANKNTSVQQTRASYQNQGIPTDSDPNNTTVFVGNLDPNVTDDLLRQVFGRHGDVVHVKIPAGKRCGFVQFADRNSAEEALQVLNGTTLGASNVRLSWGRSPTNKQPQADQNQWNGGGYYGYPTQGYENYGYAPAAQDPNMYGGYSGYPNYQPPQQQQSGYS* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00473 403 MobiDBLite consensus disorder prediction 336 358 - -
Pte19g00473 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 342 IPR000504 GO:0003723
Pte19g00473 403 MobiDBLite consensus disorder prediction 33 52 - -
Pte19g00473 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 244 IPR000504 GO:0003723
Pte19g00473 403 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 61 346 - -
Pte19g00473 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 138 IPR000504 GO:0003723
Pte19g00473 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 230 IPR000504 GO:0003723
Pte19g00473 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 334 IPR000504 GO:0003723
Pte19g00473 403 CDD RRM1_SECp43_like 73 151 - -
Pte19g00473 403 FunFam Polyadenylate-binding protein RBP45 6 156 - -
Pte19g00473 403 Gene3D - 9 160 IPR012677 -
Pte19g00473 403 CDD RRM2_SECp43_like 164 243 - -
Pte19g00473 403 MobiDBLite consensus disorder prediction 383 403 - -
Pte19g00473 403 FunFam polyadenylate-binding protein RBP45 251 350 - -
Pte19g00473 403 SUPERFAMILY RNA-binding domain, RBD 252 367 IPR035979 GO:0003676
Pte19g00473 403 FunFam Polyadenylate-binding protein RBP45C 157 249 - -
Pte19g00473 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 152 IPR000504 GO:0003723
Pte19g00473 403 SUPERFAMILY RNA-binding domain, RBD 32 150 IPR035979 GO:0003676
Pte19g00473 403 SUPERFAMILY RNA-binding domain, RBD 148 260 IPR035979 GO:0003676
Pte19g00473 403 Gene3D - 246 351 IPR012677 -
Pte19g00473 403 Gene3D - 164 240 IPR012677 -
Pte19g00473 403 SMART rrm1_1 271 338 IPR000504 GO:0003723
Pte19g00473 403 SMART rrm1_1 73 146 IPR000504 GO:0003723
Pte19g00473 403 SMART rrm1_1 166 240 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00473 Pte-Chr19 3845633 3849249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00473 73 355 Eukaryotic Initiation Factors Gene Family AT2G36660 26.736 5.69e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00473 - - gmx:100814743 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g00473 19 3845633 3849249 Pte19g00473 19 3845633 3849249 RCT