Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00455 ATGGTGATGTCTATGTTCAACCATGTAAAAAGGGCGTCGACAAGCACGGGGCGCAAGAAGATTGAGATTAAGAAACTGGAGAAGGTCTCCCACAAGCAAGTCACTTTCTCAAAGCGACGCAACGGTCTGTTTAAGAAAGCTAGCGAGATATGTGTTCTGTGCAATGCTCATGTTGCCATTGTTGTGTTTTCTCCTGCTGGAAAAGTTTTCTGCTTTGGTCAACCCAACGTGGAGACCGTCCTCAACCACTATTTGAGAGGGCAGGCCTCTGATCAGTCTGCTGTCAACGATAAGGATCACCGTCCCTACGGTGAACTGAATAGGCAGTATGAGGATGGCCTGAAGAAGCTTGCGCAGGAAAAGCTGCGGTTGAATGAGATGGAAGAGTATTTGAAGACTGGGACTGTGAGGAACTGGTGGTACGATTCCATCGATGACATGGGCATGGCAGAGCTTGACCAATATACCCTTTTTCTGAAAGAACTCGGGAGAAACTTGACTGAAAGGTTAGATGAGTTGGTGGTGAGGGCCTCTTTGCTGCCATCTCCTTTATTTTATGAGGCAATGGAAAACCATGTACTAGGCGATCATCAGTTTGGAGAAACAAAGGGTTTGCCCAATCAGGATCTTAACCTGGTTGAACGAACTATTTAA 654 0.4633 MVMSMFNHVKRASTSTGRKKIEIKKLEKVSHKQVTFSKRRNGLFKKASEICVLCNAHVAIVVFSPAGKVFCFGQPNVETVLNHYLRGQASDQSAVNDKDHRPYGELNRQYEDGLKKLAQEKLRLNEMEEYLKTGTVRNWWYDSIDDMGMAELDQYTLFLKELGRNLTERLDELVVRASLLPSPLFYEAMENHVLGDHQFGETKGLPNQDLNLVERTI* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00455 217 Coils Coil 107 127 - -
Pte19g00455 217 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Pte19g00455 217 PANTHER MADS BOX PROTEIN 18 166 - -
Pte19g00455 217 SUPERFAMILY SRF-like 17 91 IPR036879 GO:0003677|GO:0046983
Pte19g00455 217 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Pte19g00455 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 72 IPR002100 GO:0003677|GO:0046983
Pte19g00455 217 Gene3D - 29 100 IPR036879 GO:0003677|GO:0046983
Pte19g00455 217 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Pte19g00455 217 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Pte19g00455 217 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Pte19g00455 217 FunFam Agamous-like MADS-box protein AGL62 28 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00455 Pte-Chr19 3693168 3693897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00455 15 170 Type I MADS-box Gene Family AT2G24840 41.615 1.57e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pte19g00455 SRF-TF 2.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00455 - - pcin:129286086 185.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g00455 19 3693168 3693897 Pte19g00455 19 3693168 3693897 RCT