Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00444 ATGGGTGCTCCAAAACAGAAATGGACGCCAGAAGAAGAAGAAGCACTAAAAGCTGGAGTTATCAAGCATGGGCAAGGGAGATGGTGCACAATACTCAAAGATCCTGAGTTCAGCAGTGTGTTGTATCTGCGGTCCAATGTGGATCTCAAGGATAAATGGAGAAATATGTGTGTCATGCCACATGGGTATAACTCCAGGGATAAGTCCAAGTTAGCTCCGAGAAGAGCACACCAGGTTACTAGACAGGAGGAGAGCTCTTTGGCTCTTGCTAATATTGTTCCTAGTGATGAAGAACTCGTGGATACTATCCCTCGTCAAGTTTCATATGATATGGTTTCAGTTTCTGGTCCAAAGAGGTCCTTTGTAAGATTAGACAACCTTATAGTGGAAGCTATAACTAGCTTGAATGAAGTCAGTGGTTCCAACAAGACAGCTATTGCTACATACATAGAGGAACAATATTGGGCGCCTTCTGACTTTAAAAGACTTTTATCTGCAAAGTTAAAGTACATGACTTCAGTTGGAAAATTGATTAAGGTTAAACGGAGGTACATGGTTGCACCTCTGCCAACTGCTTCCAGCAGAAGGAGGAACCCACTCATGTTGCATTCTGATGGAAGGCAAAGAGACTCTTCAAAAGTCGAGAAGGATGACATCGATGTGCTTACAATGTCCCAGGTAGATCTAGAATTGGCCAAGATGAGGACTATGACTGCCGAAGAGGCTGCTTTAGTTGCTGCTAGAGCAGTTGCGGAAGCAGAAGCTGCCATAACACGGGCTGAAGAAGCTGAAAGAGATGCAGCTGCTGCAGAAGCTGATGCAGAGGCAGCCCAAGCTTTTGCAGATGTAACAATGAAGACATCGAAAGCAAAGAATAGCCCCAAGATGATGATCCGAGCTTGA 903 0.4452 MGAPKQKWTPEEEEALKAGVIKHGQGRWCTILKDPEFSSVLYLRSNVDLKDKWRNMCVMPHGYNSRDKSKLAPRRAHQVTRQEESSLALANIVPSDEELVDTIPRQVSYDMVSVSGPKRSFVRLDNLIVEAITSLNEVSGSNKTAIATYIEEQYWAPSDFKRLLSAKLKYMTSVGKLIKVKRRYMVAPLPTASSRRRNPLMLHSDGRQRDSSKVEKDDIDVLTMSQVDLELAKMRTMTAEEAALVAARAVAEAEAAITRAEEAERDAAAAEADAEAAQAFADVTMKTSKAKNSPKMMIRA* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00444 300 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Pte19g00444 300 SMART h15plus2 118 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte19g00444 300 MobiDBLite consensus disorder prediction 200 215 - -
Pte19g00444 300 Gene3D - 2 59 - -
Pte19g00444 300 MobiDBLite consensus disorder prediction 195 215 - -
Pte19g00444 300 FunFam Telomere repeat-binding factor 1 2 58 - -
Pte19g00444 300 CDD SANT_TRF 6 57 - -
Pte19g00444 300 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte19g00444 300 SMART sant 4 59 IPR001005 -
Pte19g00444 300 Coils Coil 246 280 - -
Pte19g00444 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Pte19g00444 300 SUPERFAMILY Homeodomain-like 2 60 IPR009057 -
Pte19g00444 300 Pfam linker histone H1 and H5 family 125 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte19g00444 300 Gene3D - 118 197 IPR036388 -
Pte19g00444 300 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Pte19g00444 300 PANTHER SINGLE MYB HISTONE 4 1 295 IPR044597 GO:0003691
Pte19g00444 300 SUPERFAMILY "Winged helix" DNA-binding domain 118 196 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00444 Pte-Chr19 3548890 3553273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00444 1 301 Single Myb Histone (SMH) Gene Family AT1G49950 60.784 3.90e-92 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pte19g00444 Linker_histone 8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00444 K09422 - cave:132177593 353.214