Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00442 ATGTCTGCTTTCGTAGGATCGACTCAGACATGCACTGCCTGTGACAAGACCGTTTATCTCGTTGACAAGTTAACTGCAGATGGCAGAGTTTACCACAAGGCCTGCTTCCGATGCCACCATTGCAGGAACACCCTTAAGCTAAGCAATTACTGTTCTTTTGAGGGAGTGCTCTACTGCAGACCTCACTATGATCAACTCTTCAAGAGAACAGGCAGTCTTGACAAGAGCTTTGAAGCCACACCTAAGTTTGTCAGGCCAGAAAAACAAGTTGACAAAGAGAGTGCCAAGGCAGTATCAAACTTGTTCTCAGGCACAAGGGATAGATGCGTATGCTGTAACAAGACAGTGTATCCAATTGAGAAGGTTTCAGTGAATGCAACTGCATACCATAAGAGCTGTTTCAAATGCTGCCATGGAGGCTGCACTATAAGCCCATCAAACTATATCGCACACGAGGGAAAGCTCTACTGCAAGCACCACCACATTCAACTCTTCAAAGAGAAAGGAAACTACAGCCAACTTGAAAATGAGAGAGACAAGAATGTAATAGCTGGAAAAGTCGCTTCTTTGGAGATTGCAGCTGAATTATAA 591 0.4433 MSAFVGSTQTCTACDKTVYLVDKLTADGRVYHKACFRCHHCRNTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEATPKFVRPEKQVDKESAKAVSNLFSGTRDRCVCCNKTVYPIEKVSVNATAYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLENERDKNVIAGKVASLEIAAEL* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00442 196 FunFam LIM domain and actin-binding 1 5 75 - -
Pte19g00442 196 Pfam LIM domain 11 65 IPR001781 -
Pte19g00442 196 Pfam LIM domain 109 164 IPR001781 -
Pte19g00442 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 135 174 - -
Pte19g00442 196 PANTHER OS06G0237300 PROTEIN 7 94 - -
Pte19g00442 196 Gene3D Cysteine Rich Protein 104 173 - -
Pte19g00442 196 Gene3D Cysteine Rich Protein 6 75 - -
Pte19g00442 196 SMART lim_4 108 160 IPR001781 -
Pte19g00442 196 SMART lim_4 10 62 IPR001781 -
Pte19g00442 196 FunFam LIM domain and actin-binding 1 103 173 - -
Pte19g00442 196 ProSiteProfiles LIM domain profile. 107 167 IPR001781 -
Pte19g00442 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Pte19g00442 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 134 - -
Pte19g00442 196 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Pte19g00442 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Pte19g00442 196 CDD LIM2_SF3 109 169 - -
Pte19g00442 196 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00442 Pte-Chr19 3535718 3537521 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Pte19g00442 LIM 8.7e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00442 K09377 - cave:132177345 351.288