Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00438 ATGGATCAGCAGTTTGATTTTACTTCTGAAGGGGAGTGGAGCAATACCCTAAGTGGAATGTATGCAGTAGAGGAAACAGATTTCATGGCCCAAATCAGCAGTAACTTTTGTGTTACAAATGACAGCGCAGGAATTTTGTCTTTTGGAGTCCCATCTGCATTTTGGCCTAGCAATGAACCAACTATACCAAATGCAACAGGCATTGATCAGTATCCTTATTGTTCGATAGATATTGCTAGCACACACAATTTGTTCTCTTTCTCACAAGGGAGTAGCTCTACTGGTAGTCATGAAGACTATGCCTGGAGGGACAAGAACATGGTTTTGCTGAATGGTAATTGTACCATTCCTGTTGATTTTAGCATAGGGGATGACAAAGCAAGCTCATATCTTGTTGATGTAGAGGAATCAGAATCCGACCAAGAGAAACCAATTCTTCCAAGTGAAATATTGCAGCAGGCTACTGCAGACTGTACAGGCTCTCGGCCATCTGGCAAAAATGAAAGCAACAAAGGAAACTCTCCAAAAAGACCAAGGCCTTCAGTAGAGATACCGAAGAGCAAGAGAAATGTGAAATCAAGGAAGAGCCCCAAGTCTTCTGCAGGCAACAGGGAGGGAGGGAATGAAGATCCACTGGGGCAAAGCTCAAATAGTTTCTGTTCAGAGGATGAATCTAATGCATCTCAGGAGTTGAATGGAGGGGACACTTCAGCTGTCAACTTGAATGGGAAAACAAGAACTAGTAGAGGGTCAGCCACAGATCCACAAAGCCTATATGCAAGGAAAAGAAGAGAGAGAATCAATGAGAGGTTGAGGATCCTACAGAACCTTGTCCCTAATGGAACCAAGGTTGATATTAGCACCATGCTTGAGGAAGCTGTCCAATACGTGAAGTTTCTTCAGTTCCAAATAAAGCTCTTGAGCTCTGATGATCTATGGATGTACGCTCCAATTGTTTACCATGGGATGAACATAGAGCAAGACCTGAAGATGATCACGACACCGAAACAACCATAG 1017 0.4317 MDQQFDFTSEGEWSNTLSGMYAVEETDFMAQISSNFCVTNDSAGILSFGVPSAFWPSNEPTIPNATGIDQYPYCSIDIASTHNLFSFSQGSSSTGSHEDYAWRDKNMVLLNGNCTIPVDFSIGDDKASSYLVDVEESESDQEKPILPSEILQQATADCTGSRPSGKNESNKGNSPKRPRPSVEIPKSKRNVKSRKSPKSSAGNREGGNEDPLGQSSNSFCSEDESNASQELNGGDTSAVNLNGKTRTSRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQFQIKLLSSDDLWMYAPIVYHGMNIEQDLKMITTPKQP* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00438 338 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 100 329 - -
Pte19g00438 338 MobiDBLite consensus disorder prediction 155 263 - -
Pte19g00438 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 250 317 IPR036638 GO:0046983
Pte19g00438 338 SMART finulus 257 306 IPR011598 GO:0046983
Pte19g00438 338 MobiDBLite consensus disorder prediction 196 255 - -
Pte19g00438 338 CDD bHLH_AtIND_like 252 314 - -
Pte19g00438 338 Gene3D - 253 309 IPR036638 GO:0046983
Pte19g00438 338 FunFam Basic helix-loop-helix transcription factor 252 309 - -
Pte19g00438 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 251 300 IPR011598 GO:0046983
Pte19g00438 338 Pfam Helix-loop-helix DNA-binding domain 261 301 IPR011598 GO:0046983
Pte19g00438 338 MobiDBLite consensus disorder prediction 155 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00438 Pte-Chr19 3478946 3480771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00438 11 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 42.618 8.28e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte19g00438 HLH 1.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00438 - - tcc:18608080 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g00438 19 3478946 3480771 Pte19g00438 19 3478946 3480771 RCT