Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00424 ATGAGTTCAAACCTTAGTAGTGGTGGTGGTGGTGGTGGTGGTGGAGGAAGTAGTAGTGGTGGAAGCAGTGGTGGTGGGAGTACTGGACCTTGCGGTGCCTGCAAGTTTTTGAGGAGGAAATGTGTGCCGGGATGTATATTCGCACCTTACTTTGATTCAGAACAAGGGGCAGCGCATTTTGCCGCTGTGCATAAGGTTTTTGGGGCAAGCAACGTGTCTAAACTGCTTCTGCATATTCCAGTGCACAAGAGACTTGACGCAGTGGTAACCATATGTTATGAGGCACAGGCAAGGCTTAGAGATCCTGTCTACGGCTGTGTTGCTCACATCTTTGCACTTCAACAACAGGTGGTAAGTCTGCAAGCAGAGCTTTCATACTTGCAAGCTCATCTTGCCACATTAGAGTTACCTACGCCACCCCTACCCCCACCCCCAACCATAGTCACACAACCACCACTCTCAATTGCGGACCTCCCCTCTACTGCCTCTTTGCAGGCCACATATGATCTTTCATCGCTTTTTGACCCAATGATTCAAACTTCATGGGGCATGCAACAATGTTCCGTTCATGATCCCCGGCAATCCGGTGGTACTGGTCCATCCTCGGCGGGTGGCGGCGCTAATGGTGGTAGGGGTGATCTATAA 645 0.507 MSSNLSSGGGGGGGGGSSSGGSSGGGSTGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQAELSYLQAHLATLELPTPPLPPPPTIVTQPPLSIADLPSTASLQATYDLSSLFDPMIQTSWGMQQCSVHDPRQSGGTGPSSAGGGANGGRGDL* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00424 214 ProSiteProfiles LOB domain profile. 29 131 IPR004883 -
Pte19g00424 214 Pfam Lateral organ boundaries (LOB) domain 30 128 IPR004883 -
Pte19g00424 214 MobiDBLite consensus disorder prediction 1 23 - -
Pte19g00424 214 MobiDBLite consensus disorder prediction 187 214 - -
Pte19g00424 214 PANTHER LOB DOMAIN CONTAINING PROTEIN 27 139 - -
Pte19g00424 214 MobiDBLite consensus disorder prediction 187 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00424 Pte-Chr19 3348342 3351836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00424 33 198 AS2 family AT2G45420 69.714 2.47e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte19g00424 LOB 1.4e-38 No_clan