Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00414 ATGAGTTTCTTCAAAGATATTATCGACACCTTCGGTTCAATCCTCACTCCGTCAAACTCTTCATATGATTCTCAACCTCTTTCCCATCTCGACTCGTCAACAATGGAACGCGTTTCTTCTGGGCCCTCTTCTTCTTTACCATCATCTGTCTCTAATGAACGCGTAGCGTACAAGCTCAAAGGTTATTTTGATTTGGCAACGGAAGAGATTGCCAAGGCTGTTCGTGCTGAAGAGTGGGGCTTACCTGACGATGCTATCCTTCATTACAAGAATGCTCAGCGGATTCTAGCTGAGGCTACTTCGACTCCTGTGCCTTCCTATATAAATCAAAGTGAACAAGACAAGGTGAAATCTTATCGCCAAAAGATATTGAAATGGCAAGGTCAAGTTTCAGACAGATTGCAAACGTTGAATAGGAGATCAAGCAGCAGCATATCAGCAAACAAGAGCTCTTTAACCCAAGCTCAAACTGCTGCAACTCCATCAAAAAGGTCTTCCGCAAGAAATGGTCCTATCATGAGAAATCAGGTGAACAGCAGTACAGTCCCAAAGCCTAGTCAACCAGGACCGAAATCTAGTCCAGCAGGCAGTGCTAATTATGACTCTAAATTGGTGGAAATGATTAATACTGCGATTGTGGATAGAAGTCCTTCTATAAAATGGGAAGATGTTGCTGGGCTTGATAAGGCAAAGCAAGCTTTGATGGAAATGGTTATATTGCCAACTAAGAGAAGAGATTTGTTCACTGGCCTTCGGAGACCTGCTAGAGGTTTGCTCTTGTTTGGACCACCTGGTAATGGGAAGACCATGCTTGCTAAAGCAGTAGCTTCAGAATCACAAGCAACATTTTTTAATGTATCTGCAGCTTCCTTAACGTCAAAATGGGTAGGAGAAGGTGAAAAGCTAGTCCGAACTCTATTTGAGGTTGCCATCTCCAGACAACCATCTGTTATTTTCATGGATGAGATTGATAGTATTATGTCAACAAGAATGGCTAATGAGAACGATGCGAGCAGAAGATTGAAATCAGAGTTTCTCATCCAGTTTGATGGAGTAACGTCCAATCCTGACGATATTGTTATTGTCATCGGCGCTACAAACAAGCCTCAAGAATTGGATGATGCAGTTCTCAGGCGACTGGTGAAAAGAATATACATACCTTTGCCGGATGAGAATGTCCGTAGGCTTCTACTGAAGAACAAGCTCAAGGGTCAACCGTATGCCTTACCAAGCAGAGATATCGAAAGGCTTGTGAAAGATACAGAAGGATATTCGGGAAGTGATTTGCAAGCCTTGTGTGCTGAAGCTGCAATGATGCCTATCAGAGAGTTGGGTGCAAATATTCTCACAGTCAATGCAAATCAGGTAAGATCATTGAGGTATGAAGACTTCAGGAAGGCAATGACTGTAATTAGACCTAGCTTGAACAAAAGCAAATGGGAGGAACTTGAACGATGGAATGTAGAATTTGGCTCCAATTAA 1482 0.4251 MSFFKDIIDTFGSILTPSNSSYDSQPLSHLDSSTMERVSSGPSSSLPSSVSNERVAYKLKGYFDLATEEIAKAVRAEEWGLPDDAILHYKNAQRILAEATSTPVPSYINQSEQDKVKSYRQKILKWQGQVSDRLQTLNRRSSSSISANKSSLTQAQTAATPSKRSSARNGPIMRNQVNSSTVPKPSQPGPKSSPAGSANYDSKLVEMINTAIVDRSPSIKWEDVAGLDKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAASLTSKWVGEGEKLVRTLFEVAISRQPSVIFMDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYIPLPDENVRRLLLKNKLKGQPYALPSRDIERLVKDTEGYSGSDLQALCAEAAMMPIRELGANILTVNANQVRSLRYEDFRKAMTVIRPSLNKSKWEELERWNVEFGSN* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00414 493 MobiDBLite consensus disorder prediction 20 48 - -
Pte19g00414 493 FunFam Spastin, putative 217 401 - -
Pte19g00414 493 PANTHER AAA DOMAIN-CONTAINING 109 492 - -
Pte19g00414 493 SMART AAA_5 254 390 IPR003593 GO:0016887
Pte19g00414 493 Pfam AAA+ lid domain 413 444 IPR041569 -
Pte19g00414 493 MobiDBLite consensus disorder prediction 138 199 - -
Pte19g00414 493 CDD RecA-like_spastin 223 386 - -
Pte19g00414 493 CDD MIT_spastin 59 137 - -
Pte19g00414 493 FunFam AAA-type ATPase family protein 52 141 - -
Pte19g00414 493 SMART smart 59 136 IPR007330 -
Pte19g00414 493 FunFam AAA-type ATPase family protein 389 471 - -
Pte19g00414 493 Gene3D - 51 141 - -
Pte19g00414 493 Gene3D - 217 487 IPR027417 -
Pte19g00414 493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 487 IPR027417 -
Pte19g00414 493 ProSitePatterns AAA-protein family signature. 360 379 IPR003960 GO:0005524|GO:0016887
Pte19g00414 493 Gene3D - 389 471 - -
Pte19g00414 493 Pfam ATPase family associated with various cellular activities (AAA) 258 388 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00414 Pte-Chr19 3199664 3205776 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00414 217 443 Calmodulin-binding Proteins AT3G56690 43.404 1.59e-48 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00414 K13254 - gmx:100780946 714.531