Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00403 ATGGTGAGAGGAAAGACTCAGATGAAGCGCATAGAGAACGCCACGAGCAGGCAAGTGACCTTCTCAAAGAGACGCAATGGGCTTTTGAAGAAGGCTTTTGAGTTGTCAGTGCTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTCCAAGGGGAAAGCTCTACGAATTTGCAAGCTCCTGTATGCAGGGTACTATCGAACGTTATAGAATGTACACCAAAGATACTCAGACATATGACGACTCAACAGAACCTAATGCGGAGCAATTGAAGCAAGAAGCGGATAGCATGATGAAGAAGATTGAAATGCTTGAAGTTTCAAAAAGAAAATTACTGGGAGAAGGTTTAGGCCCCTGCTCCTTCGAAGAACTTCAAGAATTAGAAAAACAAATAGAGAATAGCGCAAGCAAAGTTCGAGCAAGAAAGACTCAGGTTTATAAGCAACAAATAGAGAAACTTAAAGAAAAGGAGAAATCTCTAGCAGCTGAAAATGAAAGGCTTCGTGAAAAGGCGCCAAATTTGTCAAATCAGCAGAAGGACAATACAAACGATACAAACCATGTAGACAGCAACCCCAGTTCAGATGTGGAGACTGATTTATATATTGGACAACCAGATACAAGAGCAAGACGCATGGTGTCAATTACTTAA 651 0.4132 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSCMQGTIERYRMYTKDTQTYDDSTEPNAEQLKQEADSMMKKIEMLEVSKRKLLGEGLGPCSFEELQELEKQIENSASKVRARKTQVYKQQIEKLKEKEKSLAAENERLREKAPNLSNQQKDNTNDTNHVDSNPSSDVETDLYIGQPDTRARRMVSIT* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00403 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte19g00403 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte19g00403 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte19g00403 216 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Pte19g00403 216 MobiDBLite consensus disorder prediction 174 200 - -
Pte19g00403 216 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Pte19g00403 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte19g00403 216 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte19g00403 216 MobiDBLite consensus disorder prediction 162 216 - -
Pte19g00403 216 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
Pte19g00403 216 Coils Coil 87 107 - -
Pte19g00403 216 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte19g00403 216 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 176 - -
Pte19g00403 216 Coils Coil 121 177 - -
Pte19g00403 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte19g00403 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte19g00403 216 ProSiteProfiles K-box domain profile. 87 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte19g00403 216 FunFam MADS-box protein SOC1 14 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00403 Pte-Chr19 3124655 3128347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00403 1 158 MADS-box Gene Family AT2G45660 73.418 3.45e-79 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte19g00403 K-box 6.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00403 - - cave:132186361 275.018