Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00396 ATGGAGAGCAGCAACACTAACTGTCACAAGGAAGATGTAGATCATGATGATGAATTCCCACTTCCAGGTTTTCGTTTTCATCCAACAGATGAAGAACTCGTCGGATTTTATCTTCGCAGGAAGATCAGCAAGAAGCCTATTGGTATCGAGATTATCAAACAGATTGATATCTACAAATATGATCCTTGGGATCTTACAAGATTCAGCAGTATTATTGGGGATAAGGAATGCTTTTTCTTTTGTAAAAGAGGGAGGAAATATAAGAACAGCATAAGGCCTAACCGAGTCACTGGCTCTGGATTCTGGAAAGCAACAGGCATAGACAAACCTGTGTATTCAAATGCAGAAGGCCAAGACTGCATTGGATTGAAGAAAACATTAGTGTATTACCATGGTAGCGCAGGTAAAGGCACGAAAACGGATTGGATGATGCACGAGTTTCGTCTTCCTTCAAATTACAGTGATCACGCCACTGTGTCTAACAAGAAGATTATTGCAAATAATCTCCAATTCGCTGAAATTTGGACGTTGTGCAAAATTTTCAAGCGGAATTCCTCAAGGAAAAGGTTCCTAACTGATTACAAACAGTTATCAGCTAAACGTTCCTCCATCAAAAGCCCCAAGAGTGCTTGCATTACTATGGCTTCCACTAATAAAGAAGCATATATTGTTTTTGGAACTGACAGCCAAAATGAATACTTCTGGGAGGAGAAAACTATGATTAGCTATTGTGATCGAATAGGTGACAATTTGAATTCATCACAGACAGTGACACAGCCACAACCAGCAGCCGCAGCTTTTTCATCAGATTCTAGCATTTGGATGAATCAAAATAATGCAGATTGTTTCTTCCCGTATGATGAGAACTGGGATGATGATTTTGGATCAGTAGTAGAATTTGCTCTAGATGGATCTTGGTTTGATGTTAATAACTAG 936 0.3932 MESSNTNCHKEDVDHDDEFPLPGFRFHPTDEELVGFYLRRKISKKPIGIEIIKQIDIYKYDPWDLTRFSSIIGDKECFFFCKRGRKYKNSIRPNRVTGSGFWKATGIDKPVYSNAEGQDCIGLKKTLVYYHGSAGKGTKTDWMMHEFRLPSNYSDHATVSNKKIIANNLQFAEIWTLCKIFKRNSSRKRFLTDYKQLSAKRSSIKSPKSACITMASTNKEAYIVFGTDSQNEYFWEEKTMISYCDRIGDNLNSSQTVTQPQPAAAAFSSDSSIWMNQNNADCFFPYDENWDDDFGSVVEFALDGSWFDVNN* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00396 311 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 249 - -
Pte19g00396 311 ProSiteProfiles NAC domain profile. 20 183 IPR003441 GO:0003677|GO:0006355
Pte19g00396 311 FunFam NAC domain-containing protein 35 29 186 - -
Pte19g00396 311 Pfam No apical meristem (NAM) protein 22 149 IPR003441 GO:0003677|GO:0006355
Pte19g00396 311 SUPERFAMILY NAC domain 20 183 IPR036093 GO:0003677|GO:0006355
Pte19g00396 311 Gene3D NAC domain 29 188 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00396 Pte-Chr19 3073571 3075156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00396 12 186 NAC Transcription Factor Family AT5G39820 54.595 1.42e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte19g00396 NAM 1.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00396 - - gmx:100808692 328.176