Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00389 ATGAGATCAATCTTTTGTGGGAACCTGGATTTTGATGCACGACAGTCCGAAGTTGAAAGGATTTTCGAAAGATATGGGAAGGTCGATAGAGTGGATATGAAATCTGGTTTTGCCTTTGTGTATATGGAAGATGAGCGTGATGCTGACTATGCAATTCGAAGGCTTGACAGGACTGAATTTGGTCGAAAGGGGCGGCGATTACGTGTTGAGTGGACTAAGCAAGAACGTGACAGTCGAAGGGGCGGCGATTCAAGAAAACCTGCTGCTAACATGAAGCCATCAAAAACATTGTTCGTCATAAATTTTGATCCAGTTCATACCAGGACAAGGGACATCGAGAGGCACTTTGATGCTTATGGGAAAATAGCAAACATAAGGATCAGAAGGAACTTTGCGTTTGTTCAATATGATAACCAAGAAGATGCTACTAGGGCCTTGGAGGCTACGAATATGAGCAAGCTCTTGGATCGTGTTATTACTGTTGAGTATGCTATTCGTGATGATGATGATGACAGAAGGAATGGACACAGTCCTGACAGGAGGGGTCGTGACTTGTCCCCAGATGGAAGAGGCTATGGTCATGGAAGGTCCCCTAGTCCATACCGCAGAAGAGGCAGTACAGACTATGTCCGTGGATCAAATCCTAGCTCCAGACTTGAAGCAAGACGAAGTCCCAAGTATGATAGAGGTGAAAGCCCAGTTAACAGAAGATATGACAGTCGTTCACCCCCACCACGAGGTAGGTCTCGATCATGA 756 0.455 MRSIFCGNLDFDARQSEVERIFERYGKVDRVDMKSGFAFVYMEDERDADYAIRRLDRTEFGRKGRRLRVEWTKQERDSRRGGDSRKPAANMKPSKTLFVINFDPVHTRTRDIERHFDAYGKIANIRIRRNFAFVQYDNQEDATRALEATNMSKLLDRVITVEYAIRDDDDDRRNGHSPDRRGRDLSPDGRGYGHGRSPSPYRRRGSTDYVRGSNPSSRLEARRSPKYDRGESPVNRRYDSRSPPPRGRSRS* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00389 251 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 96 247 - -
Pte19g00389 251 Gene3D - 90 177 IPR012677 -
Pte19g00389 251 SMART rrm1_1 96 162 IPR000504 GO:0003723
Pte19g00389 251 SMART rrm1_1 3 70 IPR000504 GO:0003723
Pte19g00389 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Pte19g00389 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Pte19g00389 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Pte19g00389 251 MobiDBLite consensus disorder prediction 168 251 - -
Pte19g00389 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Pte19g00389 251 MobiDBLite consensus disorder prediction 168 190 - -
Pte19g00389 251 FunFam Serine/arginine-rich splicing factor RS31 87 178 - -
Pte19g00389 251 Gene3D - 1 89 IPR012677 -
Pte19g00389 251 MobiDBLite consensus disorder prediction 221 251 - -
Pte19g00389 251 SUPERFAMILY RNA-binding domain, RBD 2 169 IPR035979 GO:0003676
Pte19g00389 251 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00389 Pte-Chr19 3011404 3014800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00389 3 161 Eukaryotic Initiation Factors Gene Family AT4G34110 24.713 6.69e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00389 K12893 - gmx:100797778 389.037