Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00388 ATGGTGGAAGAAGGTGGCAAGGAGGTGGCAGGTGACGCCTGCACCACTGAAGAATGGTTATCTTATGCACAAGAACTTGTTCCATTGATTCTCAATAAGGCAAGGGCAGTGAAGGGCTTTCCTGGTAGGTGGAAGAGAATAATTTCAAAGCTAGAACAAATCCCATCGCGCCTATCGGATTTGTCGAGCCATCCTTGTTTCTCTAAGAATGCACTGTGCAAGGAGCAATTGCAGGCTATGTCCAAGACAATGAAGGAGGCTATTGAATTAGCTGAATTATGTGTGAATGAGAAGTATGAAGGCAAGCTTCGGATGCAGAGTGATCTCGATTCATTGTCGGGGAAGCTTGATTTGAATTTACGGGACTGTAGTCTATTGATCAAGACTGGGGTGCTTGGTGAGGCTACGCTTCCTTTGCCGTTTTCCGGTGCTGTGGCTGAAGCAGACGTAGCAATGAACAGCAATAATGTAAGGGAATTGCTCGCAAGGCTTCAGATTGGACATTTGGAAGCAAAACACAAAGCGCTGGAGAGTTTGGTCGAAGCTATGAAAGAAGATGAGAAGAATGTCTTAGCGGTCTTGGGCAGGAGCAATATTGCTGCTTTGGTTCAATTGCTAACTGCAACATCTCCAAGTATCCGGGAGAAAGCAGTCACTGTACTATGCTCACTTGCCGAAACTGGGAATTGCGAGAGCTGGTTGGTTTCAGAAGAGGTGCTATCACCTCTTATCAGGCTTGTTGAGTCAGGCAGTGCGGTCGCTAAAGAAAAGGCTACAATAGCACTTCAGAGATTGTCAATGTCATCCGAAACAGCTCGGTCAATTGTCGGTCATGGCGGGGCTCGTCCCTTGCTTGAGCTATGTCAAACTGGTGATTCAGTGTCACAGGCTGCTGCTGCTTGTACTTTGAAGAATATATCATCGGTCCCTGAGGTACGTCAAACTCTAGCAGATGAAGGAATTGTTAAAGTTATGATCAATCTGCTTAGCTGCGGCATTTTGTTGGGGTCGAAAGAGTATGCTGCTGAATGCCTGCAGAATCTCACTGCAAGCAATGACAATCTCAGAAGGTCTGTAATATCCGATGGAGGAATTGGCAGTCTACTCGCTTATCTCGATGGTCCACTGCCTCAAGAGTCCGCTGTTGGAGCATTGAGGAATTTGGTTGGATCAGTATCCACGGAAGTTTTAATTTCTCATGGTTTTCTTCCGCGACTTGTTCACGTGCTCAAATCCGGATCATTAGGGGCGCAACAAGCTGCAGCATCAGCAATTTGCCGTGTCTGCAGCATGATGGAGATGAAGAAGATGATTGGAGAAGCAGGCTGCATCCCTCTCCTCATCAAGTTGCTTGAGGCAAAATCAAACAGTGCTAGAGAAGTCTCTGCACAAGCCATTGCTAGCTTAGTTGCAGTACCCCAGAACTGCAGGGAAGTGAAGAAGAACGATAAAAGTGTTCCGAATTTGGTCCAGTTGCTGGATCCAAATCCACAAAATACAGCAAAGAAATATGCAGTTTTGTGCCTTTTATCGCTTTCTTCTAGCAAGAAATGCAAGAAGCTGATGATCTCATACGGTGCAATAGGATATCTCAAGAAACTCATTGAGATGGAAGTTCCTGGAGCCAAGAAGCTGCTTGAGAGGTTGGAGAGGGGGAAATTGAGAAGTTTGTTCAGCAGAAAGTAG 1686 0.4597 MVEEGGKEVAGDACTTEEWLSYAQELVPLILNKARAVKGFPGRWKRIISKLEQIPSRLSDLSSHPCFSKNALCKEQLQAMSKTMKEAIELAELCVNEKYEGKLRMQSDLDSLSGKLDLNLRDCSLLIKTGVLGEATLPLPFSGAVAEADVAMNSNNVRELLARLQIGHLEAKHKALESLVEAMKEDEKNVLAVLGRSNIAALVQLLTATSPSIREKAVTVLCSLAETGNCESWLVSEEVLSPLIRLVESGSAVAKEKATIALQRLSMSSETARSIVGHGGARPLLELCQTGDSVSQAAAACTLKNISSVPEVRQTLADEGIVKVMINLLSCGILLGSKEYAAECLQNLTASNDNLRRSVISDGGIGSLLAYLDGPLPQESAVGALRNLVGSVSTEVLISHGFLPRLVHVLKSGSLGAQQAAASAICRVCSMMEMKKMIGEAGCIPLLIKLLEAKSNSAREVSAQAIASLVAVPQNCREVKKNDKSVPNLVQLLDPNPQNTAKKYAVLCLLSLSSSKKCKKLMISYGAIGYLKKLIEMEVPGAKKLLERLERGKLRSLFSRK* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00388 561 Gene3D - 334 550 IPR011989 -
Pte19g00388 561 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 16 559 - -
Pte19g00388 561 Gene3D - 147 333 IPR011989 -
Pte19g00388 561 SMART arm_5 351 390 IPR000225 GO:0005515
Pte19g00388 561 SMART arm_5 431 471 IPR000225 GO:0005515
Pte19g00388 561 SMART arm_5 268 308 IPR000225 GO:0005515
Pte19g00388 561 SMART arm_5 472 514 IPR000225 GO:0005515
Pte19g00388 561 SMART arm_5 309 350 IPR000225 GO:0005515
Pte19g00388 561 SMART arm_5 391 430 IPR000225 GO:0005515
Pte19g00388 561 SMART arm_5 186 226 IPR000225 GO:0005515
Pte19g00388 561 Pfam Armadillo/beta-catenin-like repeat 394 429 IPR000225 GO:0005515
Pte19g00388 561 Pfam Armadillo/beta-catenin-like repeat 433 470 IPR000225 GO:0005515
Pte19g00388 561 Coils Coil 166 189 - -
Pte19g00388 561 SUPERFAMILY ARM repeat 158 540 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00388 Pte-Chr19 3005289 3007404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00388 405 544 U-box Gene Family AT2G23140 30.496 8.82e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00388 - - rcu:8258512 872.848