LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte19g00361	ATGGAAACTAATCGAGCGAAGTACCCACCTGGAATCGGAGGTGGTCGAGGTGGTGGTGCGAACTCCAACCCTGCATTTCAGTCAAGAAATCCTCAACAGCAGTACGTGCAGAGGGGTTTTGTTCACAATCAACAGCAATATCATCATCATCAGCAGCAGCAGCAACATCAACAAATTCAACAATGGTTGAGAAGGACCCAGTTGGGTGGTAACGATTCTGTGGTGGTTGACGAGGTTGAAAAGACCGTACAGTCTGAAGCCGTCGACCCAAGCTCACAAGACTGGAAGGCAAGGTTGAAGATGCCGCCACCTGATACTCGCCACAGGACAGAGGATGTAACAGCAACAAAAGGAAATGAATTTGAGGATTATTTTTTGAAGCGTGAGCTGCTTATGGGCATATATGAGAAGGGGTTTGAGAGACCATCACCCATTCAGGAGGAGAGTATTCCAATCGCTTTAACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACTGGAAAAACTGCTGCATTCTGCATTCCTGCCTTGGAAAAGATTGATCAGGATAATAATGTTATTCAAGTTGTCATACTTGTTCCAACACGAGAACTCGCCCTTCAAACATCTCAAGTCTGTAAGGAGCTGGGAAAACATTTGAAAATTCAGGTCATGGTTACAACGGGGGGTACTAGCCTGAAGGATGACATCATGCGTTTATATCAGCCTGTACATTTGCTTGTTGGAACTCCAGGAAGAATTTTAGATCTTGCAAAGAAAGGTGTCTGTGTTTTGAAAGACTGTAGTGTGCTTGTTATGGATGAGGCCGATAAACTTTTGTCTCCGGAGTTCCAACCTTCAGTAGAGCAACTTATCCGCTTTATGCCTGCCAATCGTCAAGTTTTGATGTTTTCAGCGACATTTCCTGTTACAGTTAAGGACTTCAAGGATAGATATCTCCGAAAGCCATATGTCATTAACCTTATGGATGAGCTCACTCTAAAGGGTATCACTCAGTACTATGCTTTTGTTGAAGAAAGACAGAAAGTTCACTGCCTCAACACACTTTTCTCTAAGCTGCAAATCAATCAATCAATTATCTTTTGCAACTCGGTGAATCGAGTGGAGCTGTTAGCCAAGAAGATCACAGAACTCGGCTATTCTTGTTTCTACATTCACGCAAAGATGTTGCAAGACCATCGTAATAGAGTTTTTCATGACTTCCGTAATGGTGCTTGTAGGAATCTTGTTTGCACAGATCTTTTCACTAGAGGAATAGACATTCAAGCTGTCAATGTTGTTATCAATTTCGATTTTCCTAAGAACTCCGAAACATATTTGCACAGGGTTGGGCGTTCAGGAAGGTTTGGCCACCTTGGATTAGCAGTGAACTTGATAACCTATGAGGATCGTTTTAATCTATATAGGATTGAGCAAGAGCTGGGAACTGAAATTAAACAAATTCCACCTCACATTGATCAGGCTATATATTGCCGATGA	1482	0.4251	METNRAKYPPGIGGGRGGGANSNPAFQSRNPQQQYVQRGFVHNQQQYHHHQQQQQHQQIQQWLRRTQLGGNDSVVVDEVEKTVQSEAVDPSSQDWKARLKMPPPDTRHRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSVLVMDEADKLLSPEFQPSVEQLIRFMPANRQVLMFSATFPVTVKDFKDRYLRKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR*	494

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte19g00361	493	Gene3D	-	324	493	IPR027417	-
	Pte19g00361	493	FunFam	ATP-dependent RNA helicase DDX6	100	323	-	-
	Pte19g00361	493	CDD	SF2_C_DEAD	331	460	-	-
	Pte19g00361	493	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	55	492	-	-
	Pte19g00361	493	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	330	490	IPR001650	-
	Pte19g00361	493	FunFam	ATP-dependent RNA helicase DDX6	324	493	-	-
	Pte19g00361	493	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	266	274	IPR000629	-
	Pte19g00361	493	Gene3D	-	81	323	IPR027417	-
	Pte19g00361	493	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	150	320	IPR014001	-
	Pte19g00361	493	SMART	helicmild6	370	451	IPR001650	-
	Pte19g00361	493	SMART	ultradead3	138	334	IPR014001	-
	Pte19g00361	493	Pfam	Helicase conserved C-terminal domain	345	451	IPR001650	-
	Pte19g00361	493	CDD	DEADc_DDX6	121	321	-	-
	Pte19g00361	493	MobiDBLite	consensus disorder prediction	1	31	-	-
	Pte19g00361	493	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	189	473	IPR027417	-
	Pte19g00361	493	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	119	147	IPR014014	GO:0003724
	Pte19g00361	493	Pfam	DEAD/DEAH box helicase	144	308	IPR011545	GO:0003676\|GO:0005524
	Pte19g00361	493	MobiDBLite	consensus disorder prediction	83	111	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte19g00361	Pte-Chr19	2792024	2800000	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte19g00361	121	490	Eukaryotic Initiation Factors Gene Family	AT3G19760	38.172	2.89e-94	290

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte19g00361	K12614		-	qsa:O6P43_027218	893.649