Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00358 ATGGATCGGAGGGACTCAATGACATTATCTGGTTCTGGTTCTTACTACATACAGAGGCCGCAACCTGAGCTTCAAGCTCCTTCTGGATTTCAACAATTGTTGAATCCAAACATGCATTTTCAACCAAATATTGGAAGTGGTTCAACACTTCCACTGGAATCTTCTGTTGGAATTTCTCCCCATAGTGTCAATGTGGGTGCACCTCTTTCATCTGGGGCTCCACAAGGAGAAATTGTTAAAAAAAAGAGAGGAAGGCCTAGGAAGTATGGTCCTGATGGGGCTGTATCATTGGCATTATCTCCCTCGTCTTCTTCTCATCTTGGGCCAGTATCGCCCAACCAGATTCTCCAGAAGCGGGGTAGAGGGCGTCCTCCTGGATCTGGCAAGAAGCAACAGTTGGCTACTCTTGGTGCATTGGTGTCTGGTTCAGCTGGAATGGGTTTTGCTACACATGTCATCAACATTGCAATTGGAGAAGATGTTGCAACAAAAATAATGGCATTTGCACAGCAGGGACAAAGAGCTATTTGTATTTTGTCGGCTAATGGTGCTGTCTCCACTGCGACTCTTCATCAACCTTCTACTTCAGGCGGCAGTGTTACATACGAGGGGCGTTTTGAGATAGTGTGTCTGTCAGGCTCCTTCGTGCTGGCTGATGCTGGTAACTCCCTAAATCGGACTGGCGGTATCAGTGTCTCCCTCGCCAGTCCAGATGGTCACGTCATTGGTGGAGGACTTGGTGGACTGCTTATTGCAGCAAGTCCTGTTCAGGTGATCATTGGAAGTTTCATATGGGGAGGAACAACGACAAAAGTCACAAAAAAACACGAGAAAACAGAGACTAATGAAGGGTCAAAAGACTCAGATCATCAGCCAATTCCTAATCCAGTTGCTTCAAGTGAAAATCTTACCCCAAACTCTACCATGGGGGGTTGGCCTGCTTCAAGACCTATGAATAATTTGCATAATTCCCATGCTGACATTGATTTGATGCGTGGTTGA 1002 0.4621 MDRRDSMTLSGSGSYYIQRPQPELQAPSGFQQLLNPNMHFQPNIGSGSTLPLESSVGISPHSVNVGAPLSSGAPQGEIVKKKRGRPRKYGPDGAVSLALSPSSSSHLGPVSPNQILQKRGRGRPPGSGKKQQLATLGALVSGSAGMGFATHVINIAIGEDVATKIMAFAQQGQRAICILSANGAVSTATLHQPSTSGGSVTYEGRFEIVCLSGSFVLADAGNSLNRTGGISVSLASPDGHVIGGGLGGLLIAASPVQVIIGSFIWGGTTTKVTKKHEKTETNEGSKDSDHQPIPNPVASSENLTPNSTMGGWPASRPMNNLHNSHADIDLMRG* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00358 333 ProSiteProfiles PPC domain profile profile. 144 287 IPR005175 -
Pte19g00358 333 MobiDBLite consensus disorder prediction 63 132 - -
Pte19g00358 333 MobiDBLite consensus disorder prediction 1 29 - -
Pte19g00358 333 MobiDBLite consensus disorder prediction 7 29 - -
Pte19g00358 333 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 59 310 IPR039605 GO:0003680
Pte19g00358 333 MobiDBLite consensus disorder prediction 274 333 - -
Pte19g00358 333 CDD DUF296 150 263 IPR005175 -
Pte19g00358 333 MobiDBLite consensus disorder prediction 97 112 - -
Pte19g00358 333 SUPERFAMILY AF0104/ALDC/Ptd012-like 148 269 - -
Pte19g00358 333 Pfam Plants and Prokaryotes Conserved (PCC) domain 150 263 IPR005175 -
Pte19g00358 333 MobiDBLite consensus disorder prediction 288 322 - -
Pte19g00358 333 Gene3D - 149 284 - -
Pte19g00358 333 SMART AT_hook_2 118 130 IPR017956 GO:0003677
Pte19g00358 333 SMART AT_hook_2 80 92 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00358 Pte-Chr19 2759549 2765378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00358 1 334 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 46.866 4.46e-80 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00358 - - qsa:O6P43_017611 394.43