Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00347 AGACCACTGGAAGAGAAAGAGAGAACCAAGCTAAGGGAACGACATCGCAGGGCAATCACTGCAAAGATTTTAGCTGGGCTGAGGAGACATGGCAATTACAATCTCAGAGTTAGAGCAGATATTAATGACGTGATTGCTGCTCTGGCTAGGGAAGCTGGCTGGGTGGTTCTTCCAGATGGAACAACCTTTCCTTCAAGGTCTCAGATGGTTGACATGCCATTGAAGGTACCAGAGCGTGATTTTTCTGGCTCCACTTATGTTCCTGTATATGTGATGCTACCCGTGAGTATAAACTGCTTACCTGCTCCTACTAAACATTGGCATCCACCTCTACCACAGTTGGGTGTGATCAATATGAAATGTGAGCTTGTTGATCCAGATGGAATGCTGAAACAACTAAGATTATTGAAGTCGATAAGTATAGATGGTGTAATGGTTAATTGCTGGTGGGGAATTGTTGAGGCACACACTCCTCAAGACTATAACTGGAATGGTTACAAGAGACTTTTTCAGATAGTTCGCGAACTTAAGCTAAAGATACAAGTTGTGATGTCATTTCATGAATGTGGAGGTAATGTTGGCGATGATGTTTGCATTCCACTACCTCATTGGGTGTCAGAAATTGGTCGAAGCAATCCTGACATATTCTTTACTGATCGAGAGGGAAGGCGGAATCCTGAATGTCTTTCATGGGCTATAGACAAGGAGCGTGTTTTAAGAGGCCGAACTGCCCTGGAGGCTTACTTTGACTTCATGAGAAGCTTTCGGGTGGAATTTGAGGAGTATTTCCAAGATGGTCTTGTTTCCATGGTTGAAGTTGGTCTTGGCCCTTGTGGCGAGTTGAGATACCCATCTTGTCCTGTAAAGCATGGATGGAGATATCCTGGTATTGGTGAATTTCAGTGCTATGATCAGTATATGTTGAAAAATCTTAGGAAAGCAGCAGATGCTAGGGGACACTCTTTTTGGGCTAGAGGACCAGATAATTCGGGTACCTACAATTCTCAGCCTCATGAAACCGGTTTCTTTTGTGATGGAGGTGATTATGATGGCTACCATGGCAGATTTTTTCTTGGATGGTACTCTCAGGTCTTAGTTGACCACGGCAGTCGGGTACTCTCTCTTGCAAAGTTAGTGTTTGAAGGGACCTGGATTGCTGCAAGGTTGTCAGGCATTCATTGGTGGTACAAGACCACAAGTCATGCCGCTGAACTGACTGCTGGCTTCTATAATTCATGCAATCGTGACGGTTATGCTGCAGTGATGTCAATGCTAAAGAAAAATGGGGTTGTCTTGAACTTTTCTTCTACTGGCTTGCATGAGTTAAACCAGCAAGATGCCTTTCCAGAAGCATTTGCTGATCCTGAAGGTTTAGTCTGGCAAGTACTGAATGCCGCATGGGATGTTTGCCTACCAGTTTCCGGTGAGAACACACTTCCTTGTCATGACAGGATCAGCTATAACAAGATCTTAGATAATGCCAAGCCCTTGAATGACCCAGATGGAAGACATTTTATGTCTTTCAACTACCTCAGGCTGGGATCCCATCTGATGGAGAGAAACAATTTCATGGAATTTGAAAGATTTGTGAAAAGAATGCATGGT 1605 0.4393 RPLEEKERTKLRERHRRAITAKILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQMVDMPLKVPERDFSGSTYVPVYVMLPVSINCLPAPTKHWHPPLPQLGVINMKCELVDPDGMLKQLRLLKSISIDGVMVNCWWGIVEAHTPQDYNWNGYKRLFQIVRELKLKIQVVMSFHECGGNVGDDVCIPLPHWVSEIGRSNPDIFFTDREGRRNPECLSWAIDKERVLRGRTALEAYFDFMRSFRVEFEEYFQDGLVSMVEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYMLKNLRKAADARGHSFWARGPDNSGTYNSQPHETGFFCDGGDYDGYHGRFFLGWYSQVLVDHGSRVLSLAKLVFEGTWIAARLSGIHWWYKTTSHAAELTAGFYNSCNRDGYAAVMSMLKKNGVVLNFSSTGLHELNQQDAFPEAFADPEGLVWQVLNAAWDVCLPVSGENTLPCHDRISYNKILDNAKPLNDPDGRHFMSFNYLRLGSHLMERNNFMEFERFVKRMHG 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00347 535 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 40 535 IPR001554 GO:0000272|GO:0016161
Pte19g00347 535 Pfam BES1/BZR1 plant transcription factor, N-terminal 3 69 IPR008540 -
Pte19g00347 535 SUPERFAMILY (Trans)glycosidases 114 534 IPR017853 -
Pte19g00347 535 Gene3D Glycosidases 78 535 - -
Pte19g00347 535 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 349 368 IPR001554 GO:0000272|GO:0016161
Pte19g00347 535 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 383 399 IPR001554 GO:0000272|GO:0016161
Pte19g00347 535 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 418 441 IPR001554 GO:0000272|GO:0016161
Pte19g00347 535 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 140 154 IPR001554 GO:0000272|GO:0016161
Pte19g00347 535 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 458 480 IPR001554 GO:0000272|GO:0016161
Pte19g00347 535 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 161 179 IPR001554 GO:0000272|GO:0016161
Pte19g00347 535 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 183 204 IPR001554 GO:0000272|GO:0016161
Pte19g00347 535 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 276 298 IPR001554 GO:0000272|GO:0016161
Pte19g00347 535 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 400 411 IPR001554 GO:0000272|GO:0016161
Pte19g00347 535 PRINTS Plant beta-amylase signature 266 275 IPR001371 GO:0000272|GO:0016161
Pte19g00347 535 PRINTS Plant beta-amylase signature 509 523 IPR001371 GO:0000272|GO:0016161
Pte19g00347 535 PRINTS Plant beta-amylase signature 524 535 IPR001371 GO:0000272|GO:0016161
Pte19g00347 535 Pfam Glycosyl hydrolase family 14 127 528 IPR001554 GO:0000272|GO:0016161
Pte19g00347 535 ProSitePatterns Beta-amylase active site 1. 187 195 IPR018238 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00347 Pte-Chr19 2690370 2694661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00347 1 68 Glycoside Hydrolase AT2G45880 95.588 3.95e-34 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Pte19g00347 Glyco_hydro_14 4e-99 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00347 K01177 - cit:102623122 815.839