Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00314 ATGATCAGACCAAAAAGGTTCTATTCCGCAAGTGATCGATGTGGTCCAGTAAACAATTCAGATTCGAGGAAGAGAATTCTTGATCCACAGGGTCCACTTCTTCGCAAGTGGAACAAAATATTTGTAATCTCTTGTGTGATAGCTGTGTCAATAGACCCTTTTTTCTTGTACGTCCCAGCAATAGATTACAACAGTCAATGCCTTAGCTTGGATGGCGCACTGCAAATTACTGCTTGTGTTCTTCGCACATTCTTCGATCTCTTTTATGTACTTCGCATAATCTTTCAGTTCCATACAGGGTTTATTGCCCCTTCTTCTAGAGTTTTTGGAAGGGGTGATCTGATTGATGACCCTGTGGCTGTAGCAAAACGATACCTGTCCTCATTTTTCATCGTCGACATTCTATCGATCCTTCCACTGCCACAGGTGGTACTTCTATCAATTAACAAAGGATCAGTTCCATTTGCCATAAAGGATGTGTTGAAATGGGGAATCTTTATCCAATATGTGCCAAGGCTCATTCGTATATATCCATTATCGAAAGAAGTGGTTAAAACTTCAGGCATATTAACAGAGACAGCTTGGGCTGGAGCTGCTTTCAATCTTTTTCTCTACATGCTAGCTAGTCATGTGGCTGGAGCCCTTTGGTACCTATTTTCTGTAGAGTCAGAGCTTAGGTGCTGGAGACAAACGTTACACAATGTATCGCTTCACAACACCATTGTATTTAGCTGTGAACCTCATGAACCAAGTGTCACTTCACTTCTCACAAACTCATGCCCTTTTATAGATCCTGATGATATCCATGATAAGTCGGTGTTCAACTTTGGCATATATGTTGAGGCTCTGAAGTCCGGTGTCATAAATTCAACAATGGACTTCCCTCAAAAGTTCTTCTTCTGCTCTTGGTGGGGTCTGCGTAATCTCAGTTCTCTTGGTCAAAACCTCCAGACTAGCACTTACATTTGGGAGATACTCTTTGCTATATGCATATCCATCTTTGGATTGGTTTTGTTTGCATTGCTTATTGGAAATATGCAGAAATATCTGCAATCAACAACTGTGAGGGTAGAAGAAATGAGAGTGAAAAGGAGGGACGCAGAGCAGTGGATGTCTCACCGTATGCTACCTGAGAAGCTGAGGGATCGCATTAGACGATATGAACATTACAAATGGCAAGAAAAGAGAGGTGTCGAAGAGGAGATTCTGATTCGTAACCTTCCTAAAGATCTTAGAAGAGATATTAAGCATCATCTTTGTTTGGATTTGCTGATGAGAGTGCCAATGTTTGAGAAAATGGATGATCAGTTGTTGGATGCAATGTGTGATAGACTAAAGCCGATCTTGTACACAGAGAAAAGTGTTATTGTACGCGAAGGGGAACCGGTAGACGAAATGGTATTTATTATGAGAGGGAATCTTGCTACCATGACAACTAATGGTGGTAGAACTGGTTTCTTCAACTCTGCTATTCTCAAAGCTGGGGATTTCTGTGGAGAAGAGCTTCTCACATGGGCTCTTGATCCCAATTCCTTCTCTCACCTTCCTACTTCAACTAGAACAGTCCAAACTTTATCAGAGGTTGAAGCCTTTGCTCTCACATCTAATGACTTGAAGTTCGTTGCTTCCCAGTTTCGCCGTCTTCATAGCAAACAGCTCCAGCACACCTTCAAGTTCTACTCCTTACAATGGAAGACATGGGCGGCTTGTTTTATACAGATAGCTTGGCGTCGCCACCATAAGAAAAAGCTTGACAAGTCATTGCATGAAGCAGAAGATAGACTACAAGATGTTTTAGCAAAGGGAAGAGGGACTTCATCTGTTAGTCTAACTACAACAATATTTGCATCAAGGTTTGCTGCCAATGCATTGAGGGCCTTGAGACAAAATAGAGATTCCAGTACAAGATTGTCCCCAAGATTAATGCCATTACTACCTCAGAAACCAGCAGAACCTGATTTCACTAAAGAGTGA 1974 0.4169 MIRPKRFYSASDRCGPVNNSDSRKRILDPQGPLLRKWNKIFVISCVIAVSIDPFFLYVPAIDYNSQCLSLDGALQITACVLRTFFDLFYVLRIIFQFHTGFIAPSSRVFGRGDLIDDPVAVAKRYLSSFFIVDILSILPLPQVVLLSINKGSVPFAIKDVLKWGIFIQYVPRLIRIYPLSKEVVKTSGILTETAWAGAAFNLFLYMLASHVAGALWYLFSVESELRCWRQTLHNVSLHNTIVFSCEPHEPSVTSLLTNSCPFIDPDDIHDKSVFNFGIYVEALKSGVINSTMDFPQKFFFCSWWGLRNLSSLGQNLQTSTYIWEILFAICISIFGLVLFALLIGNMQKYLQSTTVRVEEMRVKRRDAEQWMSHRMLPEKLRDRIRRYEHYKWQEKRGVEEEILIRNLPKDLRRDIKHHLCLDLLMRVPMFEKMDDQLLDAMCDRLKPILYTEKSVIVREGEPVDEMVFIMRGNLATMTTNGGRTGFFNSAILKAGDFCGEELLTWALDPNSFSHLPTSTRTVQTLSEVEAFALTSNDLKFVASQFRRLHSKQLQHTFKFYSLQWKTWAACFIQIAWRRHHKKKLDKSLHEAEDRLQDVLAKGRGTSSVSLTTTIFASRFAANALRALRQNRDSSTRLSPRLMPLLPQKPAEPDFTKE* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00314 657 Gene3D Jelly Rolls 427 547 IPR014710 -
Pte19g00314 657 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 19 654 - -
Pte19g00314 657 SUPERFAMILY cAMP-binding domain-like 358 551 IPR018490 -
Pte19g00314 657 Pfam Cyclic nucleotide-binding domain 450 539 IPR000595 -
Pte19g00314 657 MobiDBLite consensus disorder prediction 631 657 - -
Pte19g00314 657 ProSiteProfiles cAMP/cGMP binding motif profile. 429 513 IPR000595 -
Pte19g00314 657 Coils Coil 581 601 - -
Pte19g00314 657 Gene3D Helix hairpin bin 356 420 - -
Pte19g00314 657 SUPERFAMILY Voltage-gated potassium channels 28 351 - -
Pte19g00314 657 Gene3D - 39 353 - -
Pte19g00314 657 FunFam Cyclic nucleotide-gated ion channel 1 427 545 - -
Pte19g00314 657 Pfam Ion transport protein 37 357 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pte19g00314 657 SMART cnmp_10 429 560 IPR000595 -
Pte19g00314 657 FunFam Cyclic nucleotide-gated ion channel 1 356 420 - -
Pte19g00314 657 CDD CAP_ED 429 560 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00314 Pte-Chr19 2342305 2346349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00314 22 657 Ion Channels AT5G53130 67.601 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00314 K05391 - qsa:O6P43_017768 948.732