Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00281 ATGTACCCTCCAATTCATCTGTGTCCTAATGGCCACACCCTTTGTTCAACCTGTAAAGCTAGAGTACAGAACCAATGTCCAACGTGTAGACAGGAACTTGGTGACATAAGGTGTCTTGCCTTGGAGAAGGTAGCTGAGTCACTTGAGCTGCCTTGCAAATATTGCACTCTTGGGTGTCCAGATATATTTCCCTATTACAGTAAGCTCAAACATGAGGCCATATGTAAGTTCCGGCCCTATAATTGTCCATATGCTGGATCAGAGTGCTCTACTGTCGGAAATATTCCATTTCTTGTTTCTCATCTAAGGGACAGTCACAAAGTCGATATGCATTCTGGATCCACTTTCAACCATAGGTATGTCAAGTCAAATGCACTTGAAGTAGAAAATGCTATATGGATGTTGACGGGCATTCCTCGCAGCATAAGGGATATCCATAAGAAAGTTAGAGATAGCCATGATGGCCTTATTTTACAGCGTAACATGGCACTTTTGTTCTGTGGCGGAGATCGGAAAGAGTTAAAGCTAGGAATTACAGGAAGGATATGGAAAGAGCAACACAATACTGAAGTTCGTCGGATGTAG 585 0.4274 MYPPIHLCPNGHTLCSTCKARVQNQCPTCRQELGDIRCLALEKVAESLELPCKYCTLGCPDIFPYYSKLKHEAICKFRPYNCPYAGSECSTVGNIPFLVSHLRDSHKVDMHSGSTFNHRYVKSNALEVENAIWMLTGIPRSIRDIHKKVRDSHDGLILQRNMALLFCGGDRKELKLGITGRIWKEQHNTEVRRM* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00281 194 Pfam Seven in absentia protein family 36 136 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pte19g00281 194 FunFam E3 ubiquitin-protein ligase SINAT3 44 102 - -
Pte19g00281 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 102 IPR013083 -
Pte19g00281 194 SUPERFAMILY TRAF domain-like 47 183 - -
Pte19g00281 194 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 115 179 IPR008974 GO:0005515
Pte19g00281 194 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 136 - -
Pte19g00281 194 ProSiteProfiles Zinc finger SIAH-type profile. 47 107 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00281 Pte-Chr19 2141909 2145752 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00281 1 186 C3H Transcription Factor Family AT2G41980 56.612 2.53e-89 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00281 K04506 - ncol:116260316 302.367