Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00280 ATGAAGATTGACCCTCGCTTAGGAGGTGGGCTATGTAATGATGAAGACAAGGCGATGGTGACTGCGGTTATGGGGCCTCGAGCTTTTGATTATTTGATATCTAACTCCGTTTCTAACGAGAATTTGCTGATGGCTGTGGGGAATGATGAGAATTTGCAGAACAAGCTTTCGGATCTAGTGGAGCGTCCGAACTTGTCAAATTTCAGCTGGAACTATGCGATTTTATGGCAAATTTCAAGGTCAAAGTCAGGTGATCTGGTTTTGGGATGGGGAGATGGTTCTTGTAGGGAACCAATGGAGGGGGAGGAGTCTCAAGCTGGTGGCTTTTTCAACCTTCGTTTTCATGATGAGACTCAGCAGAAGATGAGGAAAAGGGTACTGCAGAAGCTGCATACATTGTTTGGCGGTTCAGAAGAGGACAATTACGCCTATGGATTAGACCGTGTGACTGATACAGAGATGTTTTTTCTGGCTTCTATGTACTTCTCATTTCGTCGAGGGGAAGGTGGTCCAGGAAAGTGCCTTGCATCGGGTAAGCATATCTGGCTAAGTGATGTGCTGAAATCTAGTTCAGATTACTGTGTAAGGTCATTCTTGGCTAGAACTGCTGGCATACAGACCATTGTTTTAGTCCCAACTGATATGGGGGTGGTGGAATTGGGTTCTGTGAGACCAGTAGGTGAAAGTTTTGAGTTGTTGCAGACACTAAAAATGGTGTTCTCAACATATTCAGCAGTAGCCAAAGCCAAGCCACTGTCTCAGTTTCAGGCCAACGAAAAAAAAGATGAAAGCTTTCTTTTCTCAAATTTGGCAATTGCAGACAAAGTAGACGGAGGTGACAAGATTTTTGGCCAGGATTTGAACACAGGGAACTTGGGTCGCCCTCAGTTTAGAGAGAAACTTGCCGTAAGGAAAATGGAGGAGAAGGCATGGGAAGGCTACCCTAATGGAAGTCGAATATCCTTTCCAAGCTCTCAAAATGCTGGTAGTGTTCATGGTTCAAGTTGGTTACCTATTCATGGTGTGAAGCAGACTAGTCCTGTTGAGGGATATGGTTCTCATGGTTCAGCAAATAATATACAGAAGCTAGGAAATGGTGTTAGAGAAGATTTTCGGCCTAGTAATTATCAATCCCAAAAGTCTGTGCAATTGGAGATTGATTTCTCTGTTGCCACTTCAAGGCCTTCTCTGATTGCTAGGCCTGCCAGCGCTGAACCTGAGCATTCGGATGTAGAAGCTTCGTGCAGGGAAGAACAGGCCTGTACAACTGATGATAGGAGGCCTCGTAAGCGGGGAAGAAAGCCTGCGAACGGCAGGGAAGAGGCCCTTAATCATGTGGAAGCTGAGAGACAGCGGAGAGAGAAACTCAACCAGCGGTTCTATGCACTAAGAGCTGTTGTCCCAAAAATCTCAAAAATGGACAAAGCCTCTTTATTAGGAGATGCCATTTCTTATATTAATGAGCTCCAGGCAAAACTCAGGATTATGGAAGCTGAGAGGGAGATATCTGGAGGCACATCTAGAGATTCATTAGCTTTGGCATCTTTGACAAAAGTAGAGGAACAGAATCAAATGCCGGATGTAGATGTAGAAGCGTTCCAAGATGAGGTGGTCGTGCGAGTAAGCTGCCCATTGAATTCACACCCCGTTGCCAGAGTCATCCAAGCATTCGAAGAGGCACATATCACAGTTTTGGACTCTAAACTTACTACTGCCAACGATTCTGTGTTCCATACTTTCGTGGTTAAATGTCAAGGTTCTGAACAGTTGTCGAAGGAGAAATTGATTGCAGCATTTTCCCCTGAATCATCGTTGTCTTTACAGCCATCATCGTCAACTGGTTAG 1845 0.4488 MKIDPRLGGGLCNDEDKAMVTAVMGPRAFDYLISNSVSNENLLMAVGNDENLQNKLSDLVERPNLSNFSWNYAILWQISRSKSGDLVLGWGDGSCREPMEGEESQAGGFFNLRFHDETQQKMRKRVLQKLHTLFGGSEEDNYAYGLDRVTDTEMFFLASMYFSFRRGEGGPGKCLASGKHIWLSDVLKSSSDYCVRSFLARTAGIQTIVLVPTDMGVVELGSVRPVGESFELLQTLKMVFSTYSAVAKAKPLSQFQANEKKDESFLFSNLAIADKVDGGDKIFGQDLNTGNLGRPQFREKLAVRKMEEKAWEGYPNGSRISFPSSQNAGSVHGSSWLPIHGVKQTSPVEGYGSHGSANNIQKLGNGVREDFRPSNYQSQKSVQLEIDFSVATSRPSLIARPASAEPEHSDVEASCREEQACTTDDRRPRKRGRKPANGREEALNHVEAERQRREKLNQRFYALRAVVPKISKMDKASLLGDAISYINELQAKLRIMEAEREISGGTSRDSLALASLTKVEEQNQMPDVDVEAFQDEVVVRVSCPLNSHPVARVIQAFEEAHITVLDSKLTTANDSVFHTFVVKCQGSEQLSKEKLIAAFSPESSLSLQPSSSTG* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00280 614 Coils Coil 439 459 - -
Pte19g00280 614 PANTHER MYC 29 598 IPR045084 GO:0003700|GO:0006355
Pte19g00280 614 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 440 501 IPR036638 GO:0046983
Pte19g00280 614 SMART finulus 446 495 IPR011598 GO:0046983
Pte19g00280 614 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 240 IPR025610 -
Pte19g00280 614 FunFam Transcription factor bHLH13 433 505 - -
Pte19g00280 614 Pfam Helix-loop-helix DNA-binding domain 444 490 IPR011598 GO:0046983
Pte19g00280 614 MobiDBLite consensus disorder prediction 405 450 - -
Pte19g00280 614 Gene3D - 433 503 IPR036638 GO:0046983
Pte19g00280 614 CDD bHLH_AtAIB_like 437 502 - -
Pte19g00280 614 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 440 489 IPR011598 GO:0046983
Pte19g00280 614 MobiDBLite consensus disorder prediction 398 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00280 Pte-Chr19 2137312 2140376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00280 7 614 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 51.411 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte19g00280 bHLH-MYC_N 8.6e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00280 - - qsu:111989355 855.899