Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00277 ATGGCTTACCACCAACAATTAGGTGGCTACCTGTACAATGAACTATGGAAGGCATGTGCAGGGCCTCTGGTCGATGTTCCTAGGAAACACCAGAGAGTTTACTACTTTCCACAAGGTCACATGGAACAAGTGGAAGCTTCAATAGATCAGAGACCTAATCAGCCCATCTCGAATTTTAGTCTTCCTTCTAAGATTCTTTGCCAAGTTGTCAACATTGAGTTTAAGGCGGAACCAGAAACTGATGAACTTTATGCTCAGATAACCTTAATTCCAGAACATAATCAAGAAGAGCTTGAGACTCCCAATCCCATCGAACCTGAGCCTCCAAACCCAGGGGTTCATTCATTCTGCAAGACATTAACTGCTTCTGATACTAGCACACATGGAGGGTTTTCAGTTTTGAGGAAGCATGCTAATGAATGTCTGCCTGAGTTGGACATGGCCCAAGAAATCCCAACTCAGGAGTTGATCACGCGGGATCTTCATGGGTATGAATGGAGGTTCAAGCATATTTTCAGAGGTCAACCTCGAAGGCACTTACTTACAACAGGCTGGAGTACATTTGTAACATCGAAGAGATTGGTCGCCGGGGATGCCTTTGTGTTTCTCAGGGGGGAAAATGGGGAGTTACGAGTTGGAGTAAGAAGGCTTTCTCGCCAATTAAGTCATATGCCTCCATCCGTGATCTCAAGCCAGAGTATGAATTTGGGAGTGCTTGCTACTGCACTCCATGCTTTGAATACCAAGACAATGTTTCTGGTTTATTACAGGCCAAGGGTTACCCCCTTCATTGTTGGTCTGAACAAGTTTCTAGAAGCTGTAAATAATAAGTTTACAGTTGGTATGCGCTTCAAGATGAGGTTTGAGGGAGAAGACAATCCTGAGAGAAGGTTTTTGGGTACTATAATTGGGGTTGAGGATATATCACCGCAATGGTCAAATTCCCCGTGGAGGGCACTAAAGGTTCAATGGGACGAACCGACAACAATTTCAAGGCCAGACAGGGTTTCTCCTTGGGAGATAGAGCCTTTTACAACTCCTATAGTAACTCTCACCCAACCAGGGGTGAGGAAAAGATTGCTCCCAGGTGATATATCATCTGACAATGCCTCGTGCACAACTGCTTCAGCTGGCTGCTATCATGGGTTAAATAATTCCCATGAGCTTATGCAACTAGTCGGTACTTCTGAAGTCCTTGGTGGAGAAAGTCCAGTAGCATGGCCTATCATCAAAGAAACCACCGGAATTCTTAGTAGGGGTAGCTGTTGTAGCTCAAAATTTGCCAGGGCAAGTATATGGTCTTCTGCACATTTTAATGCTTCTGCCGACTCACCATCAGTATCTGTTAATGCTCTTCCCGTTTCACCTGCACCAAGTGATGGGCTGAATGACCAGGATGAAAAGGGGAAAAAATCTGAGAACCCTACAGGTTGCTGGTTGTTTGGAATCGACTTGTCAAATGACACCAACCCTGCTCCTCCGCCAGAAAAGGGAGTATCAAATGCAGCTAACATTCCTACTGTTACCGATGATCCTCCTTCGTTCGAATCAAATTTGACACTCTCGAAAGAGCAGAAGCAGTCTAAGTCTACTGCATTCCCAAATGAGATGCAATGCAAGGACGGTTCAGTGGTTTCTCTCAGGAGTCGTATTAAAGTGAAGATGCAAGGGATTTCGGTTGGTCGAGCTGTGGCCTTGACAACATTAAATGGCTACAATGATCTTGTTGATGAGCTGGAGAAATTGTTTGACATCAAAGGAGATCTCCATCAACCAAGCAAATGGGCTATCACTTTTACTGATGATGAAAATGACATGATGCTTGTTGGCGATGACCCTTGGCAGGAGTTCTGCAAGATGGTGAAGAGGATTTTTATCAGGTCTAGTGATGAGGTCTCGAGGATCAAAACTAAAAGCAAGCTGTCTTCATCTACCTTGGGGGATAAAAGAACCATCCTGAGTCAGGATACAAGGCATCAAGCTCAAACATCTTAG 1995 0.4461 MAYHQQLGGYLYNELWKACAGPLVDVPRKHQRVYYFPQGHMEQVEASIDQRPNQPISNFSLPSKILCQVVNIEFKAEPETDELYAQITLIPEHNQEELETPNPIEPEPPNPGVHSFCKTLTASDTSTHGGFSVLRKHANECLPELDMAQEIPTQELITRDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGENGELRVGVRRLSRQLSHMPPSVISSQSMNLGVLATALHALNTKTMFLVYYRPRVTPFIVGLNKFLEAVNNKFTVGMRFKMRFEGEDNPERRFLGTIIGVEDISPQWSNSPWRALKVQWDEPTTISRPDRVSPWEIEPFTTPIVTLTQPGVRKRLLPGDISSDNASCTTASAGCYHGLNNSHELMQLVGTSEVLGGESPVAWPIIKETTGILSRGSCCSSKFARASIWSSAHFNASADSPSVSVNALPVSPAPSDGLNDQDEKGKKSENPTGCWLFGIDLSNDTNPAPPPEKGVSNAANIPTVTDDPPSFESNLTLSKEQKQSKSTAFPNEMQCKDGSVVSLRSRIKVKMQGISVGRAVALTTLNGYNDLVDELEKLFDIKGDLHQPSKWAITFTDDENDMMLVGDDPWQEFCKMVKRIFIRSSDEVSRIKTKSKLSSSTLGDKRTILSQDTRHQAQTS* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00277 664 FunFam Auxin response factor 114 218 - -
Pte19g00277 664 Gene3D - 113 217 IPR015300 -
Pte19g00277 664 Pfam Auxin response factor 242 321 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte19g00277 664 SMART B3_2 116 218 IPR003340 GO:0003677
Pte19g00277 664 Pfam AUX/IAA family 512 631 IPR033389 -
Pte19g00277 664 ProSiteProfiles PB1 domain profile. 548 629 IPR000270 GO:0005515
Pte19g00277 664 SUPERFAMILY CAD & PB1 domains 546 624 - -
Pte19g00277 664 CDD B3_DNA 114 216 IPR003340 GO:0003677
Pte19g00277 664 FunFam Auxin response factor 277 348 - -
Pte19g00277 664 Gene3D - 277 348 - -
Pte19g00277 664 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 11 635 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte19g00277 664 Gene3D - 544 636 - -
Pte19g00277 664 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Pte19g00277 664 SUPERFAMILY DNA-binding pseudobarrel domain 107 245 IPR015300 -
Pte19g00277 664 Pfam B3 DNA binding domain 116 216 IPR003340 GO:0003677
Pte19g00277 664 MobiDBLite consensus disorder prediction 445 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00277 Pte-Chr19 2106789 2110607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00277 8 641 B3 DNA Binding Superfamily AT4G23980 54.729 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte19g00277 AUX_IAA 2.3e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00277 K14486 - zju:107423671 748.814