Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00271 ATGGAAGGGTTAGCTCCAAGTAATTCATGCTCAAGGCCTATGTTAGAGAAGAAGGAAAAACCAAAGGAGCAGTTGAATTGTCCAAGATGCAATTCCACCAACACTAAGTTCTGCTATTACAACAATTACAGCCTCACACAGCCAAGATACTTCTGCAAAACTTGCAGAAGGTACTGGACTGAAGGTGGGTCTCTGAGAAATGTTCCAGTTGGTGGTGGTTCCAGAAAGAATAAGAAGGCAATCCCTACAACAGCATCATCATCATTGAAGATTCTCGATCCGAACCCACCAAGCCTGCAGGCACATATTCAAAACCCTAAGCCGTCTCACGCTAGTCAAGATCTTAATCTAGCATTCCCAGCTATAGAGAGTTATCATCATGGTATACCCTACTATGTTCATGAGGTGCCAAAGCTAGAAAACAGTAATAGTGTTCATTATCATGAGAACTCTTGTTCTACATCATCTTCTTTTTCAGCTTTGGAGTTCCTGAGGTCTGGAATGGCGTCTAGGGGTTTGAGTTCTTATATTCCAACACTGATGCCAGAGTCAGATACAATTTACCCCTCAGGGTTCCCACCACAAGAACTCAAAACAACCCTTGATTTTTCCAGCTATGCTGTTCCAGAAAACAATGGAAGGCGTGTGTTTCCTCTTGCAGAAATGAAGAATCTTCCAGCTTCCAATGATGTACAACAACACAAGGAACAGCTAAGTTCAATAGGGTATTGGAATGGAGTCATGGGTGAAAGATCATGGTAA 762 0.4239 MEGLAPSNSCSRPMLEKKEKPKEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKAIPTTASSSLKILDPNPPSLQAHIQNPKPSHASQDLNLAFPAIESYHHGIPYYVHEVPKLENSNSVHYHENSCSTSSSFSALEFLRSGMASRGLSSYIPTLMPESDTIYPSGFPPQELKTTLDFSSYAVPENNGRRVFPLAEMKNLPASNDVQQHKEQLSSIGYWNGVMGERSW* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00271 253 ProSiteProfiles Zinc finger Dof-type profile. 25 79 IPR003851 GO:0003677|GO:0006355
Pte19g00271 253 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 153 IPR045174 GO:0003700|GO:0006355
Pte19g00271 253 MobiDBLite consensus disorder prediction 1 25 - -
Pte19g00271 253 ProSitePatterns Zinc finger Dof-type signature. 27 63 IPR003851 GO:0003677|GO:0006355
Pte19g00271 253 Pfam Dof domain, zinc finger 23 79 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00271 Pte-Chr19 2065732 2066493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00271 14 254 C2C2-Dof Transcription Factor Family AT3G61850 42.701 3.44e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pte19g00271 zf-Dof 3.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00271 - - pop:7497268 303.138