Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00264 ATGAGGCCGGTTTTCGTAGGGAACTTTGAGTATGATACTCGTCAATCTGACCTCGAGAGGTTCTTTGCCAAGTACGGTAAAATTGAGCGCGTGGACATGAAATCTGGCTTTGCATTTGTTTATTACGAGGATGAACGTGATGCTGAAGATGCAATCCGTGCTCTGGACAACATTCCCTTTGGTTATGATAGGCGCAGACTGTCGGTGGAATGGGCCAAGGGTGAACGTGGGCGCCATCGTGATGGGTCAAAGAACCAGAGACCCACAAAAACATTGTTTATCATCAACTTTGATCAAGTTCGTACTAGAGTTCGGGATATTGAGAGACACTTTGAACCTTACGGGAAGATTCTCTCAGTTCGCATCCGTCGTAACTTTGCCTTTGTGCAGTTTGATACTCAAGAAGAAGCTACTAAGGCCCTTGAATGCACTCACATGAGTAAGATTTTGGACAGAGTTGTGTCAGTGGAGTATGCTCTTAGGGATGATGATGAGGGCGGTGACAGGCATTATGACAGTCCTAGAAGGGGCTATGGGCAATCACCAAGTCCAGTTTACCACAGGCGTCCAAGTCCGGACTATGGTCGACCAAGAAGCCCAGTTTATGATAGGTATGATGGCCCGGCCTATGACAGACGAAGAAGTCCTTATTATGGCAGGCACAGGAGCCCTGATTATGGTAGACCTAGGAGTGCTGGTTATGATAAATATCGCAGTCGATCACCCATCCGGAGGTCCTGA 741 0.475 MRPVFVGNFEYDTRQSDLERFFAKYGKIERVDMKSGFAFVYYEDERDAEDAIRALDNIPFGYDRRRLSVEWAKGERGRHRDGSKNQRPTKTLFIINFDQVRTRVRDIERHFEPYGKILSVRIRRNFAFVQFDTQEEATKALECTHMSKILDRVVSVEYALRDDDEGGDRHYDSPRRGYGQSPSPVYHRRPSPDYGRPRSPVYDRYDGPAYDRRRSPYYGRHRSPDYGRPRSAGYDKYRSRSPIRRS* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00264 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Pte19g00264 246 Gene3D - 85 170 IPR012677 -
Pte19g00264 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 161 IPR000504 GO:0003723
Pte19g00264 246 FunFam Serine/arginine-rich splicing factor RS31 84 172 - -
Pte19g00264 246 FunFam Serine/arginine-rich splicing factor RS31 1 83 - -
Pte19g00264 246 MobiDBLite consensus disorder prediction 163 246 - -
Pte19g00264 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 154 IPR000504 GO:0003723
Pte19g00264 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 60 IPR000504 GO:0003723
Pte19g00264 246 MobiDBLite consensus disorder prediction 205 240 - -
Pte19g00264 246 Gene3D - 1 84 IPR012677 -
Pte19g00264 246 SMART rrm1_1 91 157 IPR000504 GO:0003723
Pte19g00264 246 SMART rrm1_1 3 70 IPR000504 GO:0003723
Pte19g00264 246 SUPERFAMILY RNA-binding domain, RBD 2 164 IPR035979 GO:0003676
Pte19g00264 246 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 91 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00264 Pte-Chr19 2029726 2032176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00264 4 164 Eukaryotic Initiation Factors Gene Family AT1G49760 25.397 1.25e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00264 K12893 - mnt:21406229 417.157