Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00257 ATGGGGAAGAAGGGAGGTAGCTCATGGTTGACTGCTGTGAAAAGGGCTTTCAGATCTCCAACCAAAGACAGCGACAAAAGGAGTAGCAGAAGAGAAGACCCCGATCAAGAAGACGACGAAGAAAAGAAAAGAGAAAAGCGAAGATGGATTTTTAGGAAGACAACAAATCCAGAGTCAACCACCCCACCAAAGGTTAAGCCTGATTTGGCTACGGGGGGCTCTGCAAGAACAGAAGATGCACCAGTTGCAGTAACGACATCATCTGCTGACCAAAAACATGCTCTTGCAGTGGCAGTGGCCACTGCTGAAGCAGCAAGGGTCACTGCTCAAGCGGCAGCGGAGGTAGCCAGGATGGCGAGACCTCTTACTCGCGGTAAAGAGCACTATGCTGCCATCGTGATTCAAACTGCTTTCAGAGGATATCTAGCAAGGAGAGCACTTCGAGCTCTTAAGGGGTTGGTAAAGCTGCAAGCTTTGGTGAGAGGCCATAATGTTAGGAAGCAAGCGAAGATGACACTTCGGTGCATGCAGGCTTTGGTTCGAGTTCAAGCCCGAGTGCTTGACCAACGCATGAAATTTTCTCATGATGGCAGTAAAAAATCGGCATTCAGTGACACCAATAGTTTCTTGGAATCGCGTTATCTTCAGGATATATCAGACAGAAAATCATTATCAAGAGAGGGTAGCAGCATTGCAGATGACTGGGATAAACGACCCCATACAGTTGAAGAAGTTAAAGCTATGTTGCAGCAGAGGAAAGAAGCTGCAATGAATCGTGAGTCTCACACTTCTCAACAGATTTGGAGAAATCGTAGGAGCCCTTCGATAGGGACTGAAGAGGAACTGGAAGACAGACCCAAATGGCTTGACCGGTGGATGGCAACAAAGCCATGGGAGACAAAAAGAAGAGCTTCAACTGACCAAAGAGAATCCACTAAAACTGTTGAAATGGATACATCTCAACCTTACTCATATTTAGCACCCAACTTCCGAAGATCCCATCCGAATTATCAATACCATCCTCATCATCAGCAACACAGACTAAGCACTCATTCAGTAGCTTCACCACTCCACAGAGTCCATCAAAATCTATCTGTTCACCAATCTCCTATAACCCCTTCTCCTGCAAAGTCAAGGCCTATGCAAGTTCGGTCTGCAAGTCCTCGATTTAGCAGAGAAGATAGAAGCTGTAACACATCTCAAACACCAAGCTTAAGGTCTGATTACCATTACAATGGTAATCTGCACCAGAATGGAAGGGTTGGAACAAACAGTAGTGTCAGCAGTAGTGCTGCATTGCCGAATTACATGGCAGCAACTGAGTCTGCTAAGGCTAGAATACGCTCTCAGAGTGCACCAAGGCATAGACCCTCAACACCAGAGAGAGACAGAGTTGGCTCTGCAAAGAAAAGGCTTTCCTATCCAGTTCCAGACGCATATGGTGTAGGAGGTCATAGATATGGAAATTATAGCAATAGTTTAAGAAGTCCAAGCTTTAAGAGTGTGAATGGCTCGCACTTTGGATTGGAACAACAATCAAACTACTCATCTTGCTGCACTGAGAGTATTGGAGGTGGTGAGATTTCCCCTTCTTCTACTGGTGACCTTAGAAGATGGTTGAGGTGA 1626 0.4588 MGKKGGSSWLTAVKRAFRSPTKDSDKRSSRREDPDQEDDEEKKREKRRWIFRKTTNPESTTPPKVKPDLATGGSARTEDAPVAVTTSSADQKHALAVAVATAEAARVTAQAAAEVARMARPLTRGKEHYAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRMKFSHDGSKKSAFSDTNSFLESRYLQDISDRKSLSREGSSIADDWDKRPHTVEEVKAMLQQRKEAAMNRESHTSQQIWRNRRSPSIGTEEELEDRPKWLDRWMATKPWETKRRASTDQRESTKTVEMDTSQPYSYLAPNFRRSHPNYQYHPHHQQHRLSTHSVASPLHRVHQNLSVHQSPITPSPAKSRPMQVRSASPRFSREDRSCNTSQTPSLRSDYHYNGNLHQNGRVGTNSSVSSSAALPNYMAATESAKARIRSQSAPRHRPSTPERDRVGSAKKRLSYPVPDAYGVGGHRYGNYSNSLRSPSFKSVNGSHFGLEQQSNYSSCCTESIGGGEISPSSTGDLRRWLR* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00257 541 ProSiteProfiles IQ motif profile. 151 178 IPR000048 GO:0005515
Pte19g00257 541 ProSiteProfiles IQ motif profile. 127 155 IPR000048 GO:0005515
Pte19g00257 541 MobiDBLite consensus disorder prediction 299 318 - -
Pte19g00257 541 MobiDBLite consensus disorder prediction 455 469 - -
Pte19g00257 541 MobiDBLite consensus disorder prediction 366 428 - -
Pte19g00257 541 FunFam IQ-domain 11 126 177 - -
Pte19g00257 541 MobiDBLite consensus disorder prediction 392 428 - -
Pte19g00257 541 MobiDBLite consensus disorder prediction 1 88 - -
Pte19g00257 541 MobiDBLite consensus disorder prediction 519 541 - -
Pte19g00257 541 MobiDBLite consensus disorder prediction 299 314 - -
Pte19g00257 541 Pfam Protein of unknown function (DUF4005) 387 488 IPR025064 -
Pte19g00257 541 PANTHER IQ-DOMAIN 5-RELATED 1 475 - -
Pte19g00257 541 MobiDBLite consensus disorder prediction 440 472 - -
Pte19g00257 541 Gene3D - 124 178 - -
Pte19g00257 541 SMART iq_5 149 170 IPR000048 GO:0005515
Pte19g00257 541 SMART iq_5 126 148 IPR000048 GO:0005515
Pte19g00257 541 MobiDBLite consensus disorder prediction 366 385 - -
Pte19g00257 541 MobiDBLite consensus disorder prediction 18 53 - -
Pte19g00257 541 Pfam IQ calmodulin-binding motif 154 170 IPR000048 GO:0005515
Pte19g00257 541 Pfam IQ calmodulin-binding motif 130 148 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00257 Pte-Chr19 1952406 1955811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00257 9 542 IQD Protein Family AT4G00820 56.506 9.19e-178 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00257 - - qsa:O6P43_018534 733.791