Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00255 ATGCATAAGAACATGAGTATATCTGTGAATGGACAATCTCAAGTGCCTCCAGGATTCAGGTTTCATCCAACAGAAGATGAACTGTTGCAGTACTACTTGAGGAAGAAAGTTTCCTATGAGAAGATGGACTTTGATGTCCTTCGTGATGTTGATCTGAACAAACTCGAGCCATGGGATATTCAAGAAATGTGCAAAATAGGAACCACCCCTCAAAATGATTGCTACTTCTTCTGTCACAAGGACAGGAAGTATCCCACCGGAACACGTACTAATCGAGCCACAGCTGCCGGGTTCTGGAAAGCGACAGGCCGTGATAAGGCAATAAATAGCAACTGCAGACGGATTGGAACGAGGAAGACTTTGGTTTTCTATAGAGGCCGAGCCCCACATGGTCAAAAGTCCGATTGGATCATACATGAGTATAGACTTGACGATAATATGAGTACTGATCATTCCAGCTATATTTTGACTAAACTTAATGATCAGGTTTCCAATGTGATGGGGGAGGTGACACATGAAGAAGGGTGGGTGGTATGTAAAATATTCAAGCAGAAGAACCACATTAAAACCCCAGATAGGCCAGCTAATGAACCAAGAAGAAGCTATTTCTATGATTCATGCAATGAAGGATCTTTGGATCAAATAGTTCAACAAATGGGAAGGACTTGCAAAGAAGAAAATGAATCAAATATTCAGCATCGAAGAACATCACTCCAGCAAATTGACACGGGCATGAACAAAGGGTACTGCCATGACAGGTTTTTCAAGCTTCCAAGCACAGACAGCCCAAACTCAACAAGTCGCAAGACTTGTTTCCAGCCAATTGTCCAATATCTAACCCAAAAAAATATAGTTTTGAATGGGAAAAATCACCAAGTGATCAGTGGTAACCGTAGTACCGCAGCTGATCCTACAAACTTGGCTAACCAACTTGATGCATCTAGCTTTCGAGCTGGTCTCATCACCAACTGGGCAGCCCTTGATCGCCTTGTTGCTTCTCATCAGCTCAATCGTTGCCAAACTGAGCAGCCATCTAGGCAACTATCATGCTTCGGTGAAACCACCATAGCTGATGACCATGATCATTTTCAATTACCAACCTTGAGATCATCATCTTCCCCATCAACAACAACATCATCCCAAACGGATAACTTCATCAATCCGACCATGGACTTCGACGATGAAATTGACTTGTGGAATTATGCCCCAACATTATCAGGTTGCTACATGATGAAAATGGACGCATGA 1248 0.4271 MHKNMSISVNGQSQVPPGFRFHPTEDELLQYYLRKKVSYEKMDFDVLRDVDLNKLEPWDIQEMCKIGTTPQNDCYFFCHKDRKYPTGTRTNRATAAGFWKATGRDKAINSNCRRIGTRKTLVFYRGRAPHGQKSDWIIHEYRLDDNMSTDHSSYILTKLNDQVSNVMGEVTHEEGWVVCKIFKQKNHIKTPDRPANEPRRSYFYDSCNEGSLDQIVQQMGRTCKEENESNIQHRRTSLQQIDTGMNKGYCHDRFFKLPSTDSPNSTSRKTCFQPIVQYLTQKNIVLNGKNHQVISGNRSTAADPTNLANQLDASSFRAGLITNWAALDRLVASHQLNRCQTEQPSRQLSCFGETTIADDHDHFQLPTLRSSSSPSTTTSSQTDNFINPTMDFDDEIDLWNYAPTLSGCYMMKMDA* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00255 415 SUPERFAMILY NAC domain 5 184 IPR036093 GO:0003677|GO:0006355
Pte19g00255 415 MobiDBLite consensus disorder prediction 366 385 - -
Pte19g00255 415 Gene3D NAC domain 24 189 IPR036093 GO:0003677|GO:0006355
Pte19g00255 415 ProSiteProfiles NAC domain profile. 15 184 IPR003441 GO:0003677|GO:0006355
Pte19g00255 415 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 278 - -
Pte19g00255 415 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00255 Pte-Chr19 1936568 1938260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00255 1 400 NAC Transcription Factor Family AT2G46770 49.755 3.82e-124 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte19g00255 NAM 2.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00255 - - zju:107423780 439.884