Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00254 ATGTCTCAACCAAGATCATTTCTGATGATGGGTGAGAAAAATTATCCCAGTCAAAACATTGACACAACATTCACAAAGGTTTTTGTTGGAGGGTTGGCTTGGGAGACACAAAGGGACACAATGAGTAGGTATTTTGAGCAGTTTGGTGAGATTTTGGAGGCTGTTGTTATCACTGAAAAAAACACGGGGAGATCCAAAGGTTATGGCTTTGTTACGTTTAATGATCCAGAGGCAGCCATGAGGGCATGTCAGAATCCTTCACCTGTGATTGACGGAAGAAGAGCAAACTGCAATCTAGCATATCTTGGAGCAACCAAGAGTACTCGTTCATCAACTCCTCAACATGGTGGAGGACGGTTCAGACCAGCAACAGGATCGGTCGCACCACCTAGTTATTATCACCATAGTTCTTCATTTATGCACCAATCCTCTGGAAAATATATATTTCCTCATTCTGCATATGGGGACAGATATTCTGGCGATTCACATGATACCATGTTCCCAATGAACTATTACAGTAGTGTTTATGGTGGCCATCAACAGTTCTCAGTCTCACCTCACTCCACTGGTTCAGGATTGATACCCAATTTTTATCCATTCTATGCACAATATGGTCAGAGCAGTCATACACATGGGTTTGGAGTTCAATACCCGCAGATAATACAGTTCCCTAATTATACGCCTCAGCATTATCACTCTGCTGGTATCCTCTCTCTCCCATCTTCAATTGCAATGGCAGCTACTACCACCCCAGGTGATCCATCATCTACTTTTAAAGTTCATTTGAAATTGGACCGTTGA 801 0.4257 MSQPRSFLMMGEKNYPSQNIDTTFTKVFVGGLAWETQRDTMSRYFEQFGEILEAVVITEKNTGRSKGYGFVTFNDPEAAMRACQNPSPVIDGRRANCNLAYLGATKSTRSSTPQHGGGRFRPATGSVAPPSYYHHSSSFMHQSSGKYIFPHSAYGDRYSGDSHDTMFPMNYYSSVYGGHQQFSVSPHSTGSGLIPNFYPFYAQYGQSSHTHGFGVQYPQIIQFPNYTPQHYHSAGILSLPSSIAMAATTTPGDPSSTFKVHLKLDR* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00254 266 Gene3D - 8 120 IPR012677 -
Pte19g00254 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 84 IPR000504 GO:0003723
Pte19g00254 266 SUPERFAMILY RNA-binding domain, RBD 17 121 IPR035979 GO:0003676
Pte19g00254 266 CDD RRM_RBM24_RBM38_like 25 100 - -
Pte19g00254 266 PANTHER BOULE-RELATED 20 244 - -
Pte19g00254 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 102 IPR000504 GO:0003723
Pte19g00254 266 SMART rrm1_1 26 98 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00254 Pte-Chr19 1925012 1926349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00254 16 100 C2H2 Transcription Factor Family AT2G19380 38.824 3.94e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00254 - - qsa:O6P43_027433 347.821