Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00252 ATGTCAATTGGAGAGCAAGCTTGCAGCTTAGCTGTTTTGATTCTTTACGATGATGGCATCCCCATAACTTCGGAGAAGATCGCTACTTTGGTGAAATCTGCAAACGTCCAGGTTGAATCATATTGGCCAGGTTTGTTTGCAAAGCTTGCAGAGAAGAGAAACATCGAGGATCTGATTCTAAATGTAGGAGCTGGCGGCGGCGGGGCTGCTGTAGCTGTAGCTGCCCCCGCTGCTGGTGGAGCTTCTGCAGGTGGTGCGGCTCCTCCGCCTGCCGAAGAGAAGAAGAAGGAAGAGCCACAAGAAGAGAGTGATGATGATATGGGATTCAGCTTGTTTGATTAG 342 0.4971 MSIGEQACSLAVLILYDDGIPITSEKIATLVKSANVQVESYWPGLFAKLAEKRNIEDLILNVGAGGGGAAVAVAAPAAGGASAGGAAPPPAEEKKKEEPQEESDDDMGFSLFD* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00252 113 Gene3D - 1 63 IPR038716 -
Pte19g00252 113 Hamap 50S ribosomal protein L12 [rpl12]. 6 113 IPR027534 GO:0003735|GO:0005840|GO:0006414
Pte19g00252 113 Pfam 60s Acidic ribosomal protein 22 112 - -
Pte19g00252 113 CDD Ribosomal_P1 5 61 - -
Pte19g00252 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 113 - -
Pte19g00252 113 MobiDBLite consensus disorder prediction 79 113 - -
Pte19g00252 113 FunFam 60S acidic ribosomal protein P1 1 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00252 Pte-Chr19 1920843 1922402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00252 1 114 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 56.897 1.16e-38 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00252 K02942 - egr:104424551 130.568