Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00249 ATGGCGACTTGCACCATCTGCTTTACTCCTCTCTGTACTACTGCTTCTTTGGATAAAACCCAGATTGTGGACACTCCAAAACGCTACGTTTCGTGTTTGGGAAAGTTGCCTTCGCCGATGATTCAATTTTCAAATGCGAAACCTTTTAGATATAGCAATTTCCCTAGGGTTGAATATGCAGTAAACGACAGTGCTTTGGGAGTGTTGGATGAGGAAGACCAAGTGATAAAGGAGGAACAAGCTAACGATGTTGGAAACGACAGCGTTTCGAGTGAGTATGGAGAGAAGGAGTTGAGGCATTGTGATGTGTACGTGTGCAATTTACCAAGGAGATATGATGTAGCAGCCCTGTTTGAAAAGTTCAAGCCTTTTGGAACTGTTATCTCTGTGGAGGTTAGCAGAAATGCTTCTGGAGAAAGCAAAGGATGTGGTTACGTGACAATGGAATCTTTAAGCTCCGCCAGAGATGCAATTGCTGCTTTAGATGGCTCAGATGCTGATGGGCGCGAAATGCGCGTTAGATTTTCGGCTGAGCTGAATTATGGGAGGAGCAACCCCGAGGCAAGAAACTCATCTGGCCAGAAAGTTTTTATTTATGAAGGTCCTTATAAAGTGTACGTGGGCAACCTTGCCAGAACTGTTAGACCAGAGTTTCTGAGGAACGAGTTCAGTAAATTTGGCACTGTCGCTAGTGTTAGAGTTTTTCATGAAAGCAGAGCAGGGAGATGGTATATTTATGGCTTTGTATCTTTTCATTTAGAGAAAGAACGTGACGCAGCTTTGGCCCTTAATGGAATGATATTCCATGGTCGGAACTTGGTGGTTAAAGAAGGCAACAACAAAAAGTGA 849 0.4358 MATCTICFTPLCTTASLDKTQIVDTPKRYVSCLGKLPSPMIQFSNAKPFRYSNFPRVEYAVNDSALGVLDEEDQVIKEEQANDVGNDSVSSEYGEKELRHCDVYVCNLPRRYDVAALFEKFKPFGTVISVEVSRNASGESKGCGYVTMESLSSARDAIAALDGSDADGREMRVRFSAELNYGRSNPEARNSSGQKVFIYEGPYKVYVGNLARTVRPEFLRNEFSKFGTVASVRVFHESRAGRWYIYGFVSFHLEKERDAALALNGMIFHGRNLVVKEGNNKK* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00249 282 Gene3D - 62 181 IPR012677 -
Pte19g00249 282 PANTHER OS02G0815200 PROTEIN 37 276 - -
Pte19g00249 282 SMART rrm1_1 204 276 IPR000504 GO:0003723
Pte19g00249 282 SMART rrm1_1 102 174 IPR000504 GO:0003723
Pte19g00249 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 273 IPR000504 GO:0003723
Pte19g00249 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 171 IPR000504 GO:0003723
Pte19g00249 282 Gene3D - 183 282 IPR012677 -
Pte19g00249 282 SUPERFAMILY RNA-binding domain, RBD 200 281 IPR035979 GO:0003676
Pte19g00249 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 178 IPR000504 GO:0003723
Pte19g00249 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 280 IPR000504 GO:0003723
Pte19g00249 282 SUPERFAMILY RNA-binding domain, RBD 100 190 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00249 Pte-Chr19 1900678 1902915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00249 57 282 Eukaryotic Initiation Factors Gene Family AT1G49760 24.590 7.30e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00249 - - pcin:129288259 239.195