Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00246 ATGGATGCGGATTATTCTGGAGAGGAAGTGGTAATTAAGACAAGAAAGCCTTATACTATTACGAAGCAGCGAGAAAGATGGACAGAGGAGGAGCATAATAGGTTTATAGAAGCCTTGAAGCTCTATGGACGAGCGTGGCAGCACATAGAAGAGCATATAGGGACCAAGACTGCTGTGCAGATCAGAAGCCATGCACAAAAGTTCTTTTCAAAGTTGGAGAAAGAGGCTCTTGTCAAAGGAGTACCAATAGGAGAAGCCCTTGACATAGAAATTCCACCTCCACGACCTAAAAGAAAACCAAGCAATCCTTATCCTCGCAAAACCAATGTGGATATACCGACATCACAAATCAGGGCAAATGATGGAAAAATTGGATCTGCTTCAACTTTATCCAGTAAATCTGCACATGACGTGGTGAAAGAACCATTTCTTGAGAAAACTAATGGAGAGCAACAATCAACAACAGTGAAACAAAATAAGGATGACAGACATACAAAAGTGTGTGCTATACCTCCAGAGGCTCCCTATTCCTCTATCTCTTCAGCAAATAAAGTTCACTCACACATGGCCAAGCCCATGAGAAATTTGCCTGCATTGAGGGAGTTCCGACCTTCTGTCAAAGAGGTTGTAAATGATAAGGAAACGAATGAATCTTTGGGCACAATTGAACATGAACAATCAGGGAAAGATGATGCTAAGCAGGAAGAACACTGTAATAGCACAAGTACAGTCTCTAAATTAACAAGTGTGGATGCTTCAGAGGTGAAGTTGGCCGCTCATGAGGAAACAGATGATTTAAACTGTCCATTGAAAAAGGATGGCATGCAATACACTCCGAATTATCCAAGGCATGTCCCTGTGCAAGTCCTAGATGGAAGCCTAGGGGCATTCACTCAAGTTCGTTCACATGTTCATCCAATGAGAGGTGTTAGTGGTGAACCTAGCCTGTTTACAGATTCCCCTCAATCAAATGCCAGTGAAATTCAAAATAATAGAGCAAGATTTACTGTTAACCAATCTTTTCCTTTGTATCCTCCCCTTGCTCCTGTTCCAAATATTGGAGACAATTATGTCTCCTCCACGTTTTCAAATCTTATTCTATCTACTCTGTTACAGAACCCTGCAGCACAAGCTGCAGCAAGTTTTGCTGCTACATTCTGGCCCTATGCAAATATAGAGACTTCTGCTACCTCTCAAGCATGCTCTCCAGGTTTTACATCAAAACAGATAGGATCTACCCCAAGTATGGAAACTATTGCAGCAGCAACTGTAGCTGCTGCGACCGCATGGTGGGCAGCCCATGGGCTACTTCCTTTATGTGCTCCACTTCATACTGCTTTCATGTGTGCTCCAGCATCAGCAGCAGGCATGGCATCATTATACACTAGTCAAGCAGCAGGAACCAATACTGTTGAAGACACTACTTTCAAAAATCCTCCCTTACAAGGACTTCTTGTGCCAGAACACTCTGAAGCTACACAAGGTCAAGATTCTGTTTCAAAGTCGCTGGCAGGTTCATTATCAGATTCTGAGGAGAGTGGAGGTGCAAAGAGGAATGATGTCTCAGAAGTTATTGATCGTGAAAAAGACACTGCCATTGCTGAGAACAATGATTCAAACAAAGTGAAGGGCTTAAAGCAGGTAGACCGCTCCTCTTGTGGCTCCAACACAACATCTTGTAGTGAAGTAGAGACAAACGTCATGGAGACAGACAAGAAAACAAACGAAGAGCAAAAAGCAGCTGAAGCAATTCAATCAGCTTCAGACACCAGCAATCGTCGCGGTAGAACATCCAGCAATAGTACTGATTCTTGGAAAGAGGTTTCTGAAGAGGGACGGCTGGCTTTTCAAGCACTCTTCAAGAGGGAGGTGTTGCCACAGAGTTTCTCTCCTCCTCAGGATCTGAAAACTAAAGGTCGCCTAAAGGAAAGTATTCAAGAAAATCATCAAACTATGAATCACACATTAGGACAGGTATCTACCCTTGACCTTAACAGCAAGAAACGCAGTCCAGATCAACAAGAAGTAGGAAAAAGCTCGTCTCCGACTGGAAATGGTGAGGTAGATGGACAACTAACAATAGGTCTTGGACAAGGGAAGCTTAAGCTTCGACGAACTGGATTCAAACCTTACAAAAGGTGTTCAGTAGAGGCGAAGGAAAATAGAGTTGGTCATGCAAACAACCAAAGTGAGGAGAAAGGCCCCAAAGGAGTATGCTTGGAAGGGGAGGCTTCAACTTGA 2241 0.4333 MDADYSGEEVVIKTRKPYTITKQRERWTEEEHNRFIEALKLYGRAWQHIEEHIGTKTAVQIRSHAQKFFSKLEKEALVKGVPIGEALDIEIPPPRPKRKPSNPYPRKTNVDIPTSQIRANDGKIGSASTLSSKSAHDVVKEPFLEKTNGEQQSTTVKQNKDDRHTKVCAIPPEAPYSSISSANKVHSHMAKPMRNLPALREFRPSVKEVVNDKETNESLGTIEHEQSGKDDAKQEEHCNSTSTVSKLTSVDASEVKLAAHEETDDLNCPLKKDGMQYTPNYPRHVPVQVLDGSLGAFTQVRSHVHPMRGVSGEPSLFTDSPQSNASEIQNNRARFTVNQSFPLYPPLAPVPNIGDNYVSSTFSNLILSTLLQNPAAQAAASFAATFWPYANIETSATSQACSPGFTSKQIGSTPSMETIAAATVAAATAWWAAHGLLPLCAPLHTAFMCAPASAAGMASLYTSQAAGTNTVEDTTFKNPPLQGLLVPEHSEATQGQDSVSKSLAGSLSDSEESGGAKRNDVSEVIDREKDTAIAENNDSNKVKGLKQVDRSSCGSNTTSCSEVETNVMETDKKTNEEQKAAEAIQSASDTSNRRGRTSSNSTDSWKEVSEEGRLAFQALFKREVLPQSFSPPQDLKTKGRLKESIQENHQTMNHTLGQVSTLDLNSKKRSPDQQEVGKSSSPTGNGEVDGQLTIGLGQGKLKLRRTGFKPYKRCSVEAKENRVGHANNQSEEKGPKGVCLEGEAST* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00246 746 PANTHER SWI/SNF COMPLEX-RELATED 8 623 - -
Pte19g00246 746 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Pte19g00246 746 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Pte19g00246 746 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Pte19g00246 746 MobiDBLite consensus disorder prediction 489 509 - -
Pte19g00246 746 Gene3D - 26 73 - -
Pte19g00246 746 FunFam protein REVEILLE 6 isoform X1 26 74 - -
Pte19g00246 746 MobiDBLite consensus disorder prediction 718 746 - -
Pte19g00246 746 MobiDBLite consensus disorder prediction 489 608 - -
Pte19g00246 746 MobiDBLite consensus disorder prediction 513 536 - -
Pte19g00246 746 MobiDBLite consensus disorder prediction 580 605 - -
Pte19g00246 746 MobiDBLite consensus disorder prediction 650 696 - -
Pte19g00246 746 SMART sant 23 71 IPR001005 -
Pte19g00246 746 CDD SANT 26 69 IPR001005 -
Pte19g00246 746 MobiDBLite consensus disorder prediction 211 237 - -
Pte19g00246 746 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Pte19g00246 746 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Pte19g00246 746 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Pte19g00246 746 MobiDBLite consensus disorder prediction 107 135 - -
Pte19g00246 746 MobiDBLite consensus disorder prediction 549 565 - -
Pte19g00246 746 MobiDBLite consensus disorder prediction 650 667 - -
Pte19g00246 746 MobiDBLite consensus disorder prediction 87 162 - -
Pte19g00246 746 MobiDBLite consensus disorder prediction 211 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00246 Pte-Chr19 1882406 1887025 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pte19g00246 Myb_DNA-binding 5.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00246 K12133 - qsu:112036661 750.355