Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00234 ATGGATGACTCAACGGCGTCCAATGACAGTTCTGCTATTCAATTAACTGGCACGATCACGGTGGCTGCTGCGCTTGTACTCTTCTTGGTGGTAGTGTTTGTGGTTGCTCTGCATCTCTATGCCAAATGGTTCTGGTGGCAGACTGAAGAAGCCACCAACTATGAAGGTCGTAGCCGCCGTCATAGGCGGAGGTTTGTCTTCACCCCAGGTCAAGACCCTACTATATCCACCACTGAAGGGAGAGGGCTTGACCCTGCAATCCTCAAGTCCATACCTGTAATGCCATTCAATTCAGATGACTTCAAAGATGGTTTGGAATGTGCTGTTTGCCTCTCTGAACTTGAACAAGGCGACAAGACCAGGCTGCTTCCTAAATGCAATCATGGGTTTCATGTTGATTGCATAGACATGTGGTTTCAATCGCATTCTACCTGCCCAATTTGCAGGAATCCTGTTGCTTCTACAGGTTCTGATGATAATTTGGGACAGAATATTCAGATACCAGCAGAGAATTTGACTTCTGAGACACCAATTTTCCCCACTAATGTGTTAGTATGGGGCAACCAAACGCACCTGAAGTCTGTGGGGGCTGGTTTAGGAGAGGGTACTTCTTCTCAACCTACGAGCTCCTCTTCTTCTGCTTCAACTTCACTGTCTGCTGTGGGTAATAGTAGTTGGCCTCAGGGAATGCTGGTGATTGATATACCAAATGAGATGATCAATCCATCATCTTCGTCACCTTCTACTGCGGCCAGGTTTGCTGACGATGAGCTTAAATCACCAATGGTTAATAGACTGAGGTCATTGAAGAGACTGTTGAGCAGGGAGAAGAGATCAAATCCTTGCAGCCCTAGTTCTGTGGATGTGGAACGGACAGGTCAGAGCTAA 888 0.4696 MDDSTASNDSSAIQLTGTITVAAALVLFLVVVFVVALHLYAKWFWWQTEEATNYEGRSRRHRRRFVFTPGQDPTISTTEGRGLDPAILKSIPVMPFNSDDFKDGLECAVCLSELEQGDKTRLLPKCNHGFHVDCIDMWFQSHSTCPICRNPVASTGSDDNLGQNIQIPAENLTSETPIFPTNVLVWGNQTHLKSVGAGLGEGTSSQPTSSSSSASTSLSAVGNSSWPQGMLVIDIPNEMINPSSSSPSTAARFADDELKSPMVNRLRSLKRLLSREKRSNPCSPSSVDVERTGQS* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00234 295 MobiDBLite consensus disorder prediction 196 221 - -
Pte19g00234 295 MobiDBLite consensus disorder prediction 199 221 - -
Pte19g00234 295 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 156 IPR044675 -
Pte19g00234 295 MobiDBLite consensus disorder prediction 258 277 - -
Pte19g00234 295 Pfam Ring finger domain 106 149 IPR001841 -
Pte19g00234 295 FunFam RING-H2 finger protein ATL3 74 154 - -
Pte19g00234 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 158 IPR013083 -
Pte19g00234 295 SMART ring_2 107 148 IPR001841 -
Pte19g00234 295 SUPERFAMILY RING/U-box 87 154 - -
Pte19g00234 295 MobiDBLite consensus disorder prediction 278 295 - -
Pte19g00234 295 CDD RING-H2_EL5-like 106 149 - -
Pte19g00234 295 MobiDBLite consensus disorder prediction 238 295 - -
Pte19g00234 295 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00234 Pte-Chr19 1774846 1775733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00234 1 280 C3H Transcription Factor Family AT1G53820 40.979 7.36e-66 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00234 - - qsa:O6P43_027473 336.65