Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00233 ATGAGCGTTATCTACTTTCTCTTTGCTGCCTGCTTACCAGTCCTGTACTTGCTTGGAAGAAATATCAAAAGGTTGCGGAAACATAGACAAGGTGTCAAGGTTGCTGCCGCTGAGCATGGCAAAGCTGAAGAAGAGACTGTGGCTTTCTACTGTGCTGTGTGCCTAAGTGGAGTTTCTGATGATGGCGAAAACAATATTAAGTTTCTGTCTGAATGTCAACACAGTTTCCATGTCAGTTGCATAGAAGCCTGGTTGGAAACACATGGGACCTGCCCTCTATGTAGAAATGCAGTCTGGATAAGTCATGTTCCAAAGGAAGATGAAAAGGAAAATAGTTTTGGTGGCATGTTGATTAACTCTATATCGTACTGTGCCTATCTTTTCATTCAATCTTTTCTTTTCCCTGTTCAGCTTGTGCCAACCATGAGTGAACCTTTTTGTTATCATCCCTGA 453 0.4216 MSVIYFLFAACLPVLYLLGRNIKRLRKHRQGVKVAAAEHGKAEEETVAFYCAVCLSGVSDDGENNIKFLSECQHSFHVSCIEAWLETHGTCPLCRNAVWISHVPKEDEKENSFGGMLINSISYCAYLFIQSFLFPVQLVPTMSEPFCYHP* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00233 150 SUPERFAMILY RING/U-box 43 101 - -
Pte19g00233 150 PANTHER RING FINGER DOMAIN-CONTAINING 38 98 - -
Pte19g00233 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 100 IPR013083 -
Pte19g00233 150 ProSiteProfiles Zinc finger RING-type profile. 51 95 IPR001841 -
Pte19g00233 150 SMART ring_2 51 94 IPR001841 -
Pte19g00233 150 Pfam Ring finger domain 50 95 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00233 Pte-Chr19 1767032 1767484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00233 51 100 C3H Transcription Factor Family AT2G20030 52.000 3.61e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00233 - K19038 gmx:100500375 70.8626