Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00210 ATGGCTGCACCTCAAGCTGCACCACCGCAGCCTTCTCAGAAGGAGACTGACATTCAGATGATGTTGGCCGCTGAATGCCATCTAGGCACTAAGAACTGGGATCTCCAAATGGAGCGTTACATCTTCAAGCGTCGTCAAGATGGTCTGTTTCTCAAACCCAGTTCAATTTCACGTTTATATCTACATTTGTTAACATGGGAGAAGCTGCAGCTTGCTGCTAGGGTGATTGTTGCAATTGAGAATCCCAAAGACATTATTGTTCAGTCTGCGAGGCCTTATGGTCAGAGGGCAGTTCTGAAAGTTGCTCAGCATACTGGTGCCAATGCCATTGCTGGAAGGCACACGCCCGGTACGTTCACCAATCAGATGCAGACATCTTTCAGTGAGCCACGACTTCTGATCTTGACTGACCCTAGAACTGATCAACAGCATATCAAGGAAGCTGCACTTGGAGACATCCCCACAATTGCTTTCTGTGACACTGATTCTCCAATGCGTTATGTTGACATTGGAATACCTGCCAACAACAAGGGTAGGCACAGTATTGGATGTTCTTTTGGTTGTTAG 567 0.4691 MAAPQAAPPQPSQKETDIQMMLAAECHLGTKNWDLQMERYIFKRRQDGLFLKPSSISRLYLHLLTWEKLQLAARVIVAIENPKDIIVQSARPYGQRAVLKVAQHTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDQQHIKEAALGDIPTIAFCDTDSPMRYVDIGIPANNKGRHSIGCSFGC* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00210 188 PRINTS Ribosomal protein S2 signature 168 182 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pte19g00210 188 PRINTS Ribosomal protein S2 signature 105 122 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pte19g00210 188 PRINTS Ribosomal protein S2 signature 147 158 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pte19g00210 188 PRINTS Ribosomal protein S2 signature 130 147 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pte19g00210 188 PRINTS Ribosomal protein S2 signature 18 36 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pte19g00210 188 Pfam Ribosomal protein S2 127 182 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pte19g00210 188 Pfam Ribosomal protein S2 21 124 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pte19g00210 188 PANTHER 40S RIBOSOMAL PROTEIN SA 9 186 IPR005707 GO:0003735|GO:0006412|GO:0015935
Pte19g00210 188 SUPERFAMILY Ribosomal protein S2 14 184 IPR023591 -
Pte19g00210 188 Gene3D - 17 188 - -
Pte19g00210 188 CDD RPS2 21 183 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pte19g00210 188 NCBIfam 30S ribosomal protein S2 14 186 IPR005707 GO:0003735|GO:0006412|GO:0015935
Pte19g00210 188 FunFam 30S ribosomal protein S2 17 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00210 Pte-Chr19 1606967 1608169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00210 10 186 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 77.528 4.94e-99 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00210 K02998 - fve:101292825 291.197