Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00203 ATGGCTGATAGTTCATTTGAGGTTGAACAATTCAGCACCTCAAGGCGAATGCCGCATTACACTACGCCAGTGAATTCTCAGTACGATTCTTTCTCCATGGCGCCTTCTAGCTCTCGGCACCATTCAACTCGTAGAAGAACAAGGAAATCAGTTCCAACGACACCCTTTGCTTCAGATAATGATATGTCCTGGCAAGAAGAGGTTTCATGGCAATTTGAGCCAACTGGCTGGAGTGAGAGTCGGAGTTTCTTAGGTTCAGCTTTAAGTCCATGGGCGCCTTACAACGCTCCTAGAAGTTCAGCTGAGAGTACTGCGGTTCGCAGATCAGCCAATGACTATTATCTGTCAAGGACAACACAGCACAGAAGATCCTCAAAACCACATTATGAAACTTCTGGTTATCATGCTGCAGGAAGAGTTGAGCTTCGTAGTTATGTCTCCGCCGACAATGATCAGTCACGTTCTTTCGTCGGAAGATATAACTCTCCTCGTCAACAAAGTAAGGCTGATGTGTTCTCTAAGTTACGAGTTATCAAGGAAGGTGGAGTTAGCAGTCCTTTAGCTAAAGAAGATGAGCTAGTGAGTGCTATTGAGCATCACATACAAGACAATATCGGTTTATCATCTTTTGCTGAAGATGATCGTCATCTTGGCGATCATTTAGCTCAAGGAGAAATTTGCCGTGATGAGTTCATCCAGCATAGTTTTACTTCGTCCCAAAGAAATTACCGATCTCAATACATTGAGAAGGTCTCAGAATATGAAGATGATGAAGATATTGATGGAGATGCAGCTGATGGGGCAGTAAAGCCTGTTGGTTTGTTTAGCTTGTTTAGATACTCGACAAAGTGTGATATCTTGCTTTTGGTTTTGGGATGTCTTGGGGCTCTGATAAATGGAGGTTCTCTTCCTTGGTATTCATATCTTTTTGGCGAACTAGTGAACAAGATTGCTTCGGAATCTTTGTCTAGTGACAAAACTCAAATGCTCAAAGATGTAGAGAAGGAATGCAAATTCATGGCAGTACTAGCCGCTATTGTCGTGATTGGAGCATATTTAGAGATCACTTGTTGGAGGTTAGTGGGTGAGAAATCTGCTCACAGAATAAGAACTGAGTATCTCAGAGCTGTTCTTCGACAGGACATAAGCTTTTTCGATACAGAAGTCAACACTGGTGACATTATGCATGGAATTTCAAGTGATGTTGCTCAAATTCAGGAAGTTACCGGAGAAAAGATGGCAAGGTTTGTAAACCAAATTTGTACATTCATATGTGGATATACAGTTGGGTTTCTAAGGTCATGGAAGATATCGTTCGTGGTGATGTCTGTTATTCCTGTAACAATGTTCTGCGGCATCGCTTACAAAGCCATCTATGGCGGGCTAGCAGCAAAAGAAGAAGGTTCTTACCGGAAAGCTGGAAGCATTGTGGAGCAAGGCATTAGCTCAATTAGAACTGTGTTTTCCTTTGTAGGAGAGGACCATTTGGCAACAAAATATAGTGAATCATTGGATACATTGACTCCATTAGGAGCAAGAATTGGTTTTGCCAAGGGTGGAGGAATTGGAATTATATATCTAGTCACGTATTCTACTTGGGCATTAGCTTTCTGGTACGGCTCTATTCTGATTGCCAGGGGCGAGATTTCTGGAGGTGAAGCCATAGCTTGTTTCTTTGGTGTGAATGTCGGCGGCAGGGGATTGGCATTGGCACTGTCATATTATGCACAATTTGCGCAAGGCACAGTCGCAGCAGGTCGTGTTTTTGAGATCATAGATAGAGTCCCACAGATAGATCCTTATAGTCCAGAGGGGAAGCAACTCAAAATTGTTCAAGGGAAAATTGAGTTTAAGAATGTATCTTTCGCGTACCCTTCTCGCCCTGATGCTCTAATCCTTCATTCCATTAAACTAGTGGTTCCATCCTTCAAGACTCTTGCTTTGGTTGGTCCTAGTGGAGGGGGCAAGTCTACAATATTTGCTCTCTTAGAGAGATTTTATGACCCAACTGCAGCTTCTGATGCAACCACAAGATCACCTCCACCTAAACAAAGTGGTATTCAAAAAACAGTACGCTTCTATGATTATGAACAATCAATCCAAGAGTTGTCGAGATCCATGTATGCAGATGAAGTTTCGCAGTCAAAGAACTTAAAGTCCGGAATAGAGGACAAGCAAACTGAGTTGGAACAAAGTCAAAGCACAGCGCCTAGAAAGTTCAAACTGTCTGAAGTTCTGAAGTTACAAAAACCTGAACTCATTGTCTTGTTGTCTGGTTTTATTTTCGGTATGGTTGCTGGAGCCATTCTATCCGTGTTTCCGTTGATTTTAGGTATAGCCCTTGAAGTATATTTCAAGACAGACACACATAAAATGAAAAAAGAGGTCGGATACCTTTGTTTAGCACTTGTTGGACTTGGTTTTGGTTGCATAGTTACAATGACAGGGCAGCAAGGTTTGTGTGGCTTGGCTGGAACAAAGCTTACAATGAGAGTGAGAGACCTCTTGTTTCGATCAATACTAAAACAAGAACCTGCGTGGTTTGATTTTGATGAAAACTCAACTGGGGTACTTGTTTCGAGGCTTGCAGTTGATTCTGTTAGTTTTCGTTCAGTCCTTGGTGATAGACTATCTGTATTATTAATGGGGTTGAGCTCAGCTGCTGTAGGTCTTGGTGTTTCATTTTTTTTGCAATGGAAGCTAACACTTTTGGCTGCAGCCTTAACTCCTTTCACCCTTGGTGCAAGCTATCTGACCTTGATCATAAACATTGGACCAAGACTTGACAATAATGCTTATGCAAAGGCAAGCACTATTGCTTCTGGGGCAGTGTCAAATGTAAGAACTGTGGCCACTTTTTCTGCTCAAGAAGAGATAGTGAAGTCATTTGACCGTGCATTGGCAGAACCTAAGAGAAAATCAGAGGAAAGGTCTCAAATTCTAGGCCTAACACTTGGTTTTGCACAAGGTGCCATGTATGGAGCATATACCTTAACACTGTGGTTTGGTGCATACCTTGTCAAAGAAAATGAAACTAGCTTCGGTAATGTATACAAGATTTTTCTTATTCTAGTATTGAGTTCATTTTCTGTTGGACAACTAGCTGGCCTGGCACCAGATACATCAAGAGCACCAATGGCTATCCCTGCAGTTCTTGACATAATATACCGTATGCCATTGATTGGTAATCGTAGAGGAAAAGGTAAAAAGTTAGAGAGGTCAAAACCATTAGATATAGAGTTCAAAATGGTGACATTTGCATATCCTTCTAGGCCTGAGACAATTATACTGAGGGACTTTAATTTGAGGGTCAAAGGTGGAAGTATAGTGGCTGTTGCGGGACCTAGTGGATCAGGAAAATCAACACTGTTATGGCTAATACAAAGGTTTTACGATCCAAATCAAGGGAGTGTGAAGATGGGGGGGGTGGACTTGAGAGAAATTGATCTGAAGTGGTTAAGGAAACGAACAGCTTTGGTAAGTCAGGAACCTGCACTATTTGCTGGAAGCATAAGAGACAACGTTGCTTTTGGAAGCATTAATGCTTCATGGTCAGAAATTGAAGAAGCAGCTAATGAAGCTTACATACACAAATTCATTAGTGGCCTCCCTCAAGGTTATGAAACTCAGGTTGGTGATGGTGGGGTCCAGCTATCTGGTGGGCAGAAACAAAGGATTGCTATTGCAAGAGCCATATTGAAGAGATCAAGAGTGCTATTGCTTGATGAAGCAAGCAGTGCATTGGACTTAGAGTCAGAGAAACATGTACAAGAAGCTTTAAGGCAGTACTCAAAACGGGCCACAACAATTGTGGTAGCCCATCGTCTTTCTACAATCAAAGAAGCTGATATGATTGCAGTTGTCAAAGAAGGTGTAGTAGTTGAATATGGTAGTCATGATACTCTCATGGCTTCACAAGCCAATGGCTTGTATGCTAGCCTTGTCCGTGTTGAAACTGAAGCTAATGCCATTTCTGGATACCGTTAA 3987 0.4199 MADSSFEVEQFSTSRRMPHYTTPVNSQYDSFSMAPSSSRHHSTRRRTRKSVPTTPFASDNDMSWQEEVSWQFEPTGWSESRSFLGSALSPWAPYNAPRSSAESTAVRRSANDYYLSRTTQHRRSSKPHYETSGYHAAGRVELRSYVSADNDQSRSFVGRYNSPRQQSKADVFSKLRVIKEGGVSSPLAKEDELVSAIEHHIQDNIGLSSFAEDDRHLGDHLAQGEICRDEFIQHSFTSSQRNYRSQYIEKVSEYEDDEDIDGDAADGAVKPVGLFSLFRYSTKCDILLLVLGCLGALINGGSLPWYSYLFGELVNKIASESLSSDKTQMLKDVEKECKFMAVLAAIVVIGAYLEITCWRLVGEKSAHRIRTEYLRAVLRQDISFFDTEVNTGDIMHGISSDVAQIQEVTGEKMARFVNQICTFICGYTVGFLRSWKISFVVMSVIPVTMFCGIAYKAIYGGLAAKEEGSYRKAGSIVEQGISSIRTVFSFVGEDHLATKYSESLDTLTPLGARIGFAKGGGIGIIYLVTYSTWALAFWYGSILIARGEISGGEAIACFFGVNVGGRGLALALSYYAQFAQGTVAAGRVFEIIDRVPQIDPYSPEGKQLKIVQGKIEFKNVSFAYPSRPDALILHSIKLVVPSFKTLALVGPSGGGKSTIFALLERFYDPTAASDATTRSPPPKQSGIQKTVRFYDYEQSIQELSRSMYADEVSQSKNLKSGIEDKQTELEQSQSTAPRKFKLSEVLKLQKPELIVLLSGFIFGMVAGAILSVFPLILGIALEVYFKTDTHKMKKEVGYLCLALVGLGFGCIVTMTGQQGLCGLAGTKLTMRVRDLLFRSILKQEPAWFDFDENSTGVLVSRLAVDSVSFRSVLGDRLSVLLMGLSSAAVGLGVSFFLQWKLTLLAAALTPFTLGASYLTLIINIGPRLDNNAYAKASTIASGAVSNVRTVATFSAQEEIVKSFDRALAEPKRKSEERSQILGLTLGFAQGAMYGAYTLTLWFGAYLVKENETSFGNVYKIFLILVLSSFSVGQLAGLAPDTSRAPMAIPAVLDIIYRMPLIGNRRGKGKKLERSKPLDIEFKMVTFAYPSRPETIILRDFNLRVKGGSIVAVAGPSGSGKSTLLWLIQRFYDPNQGSVKMGGVDLREIDLKWLRKRTALVSQEPALFAGSIRDNVAFGSINASWSEIEEAANEAYIHKFISGLPQGYETQVGDGGVQLSGGQKQRIAIARAILKRSRVLLLDEASSALDLESEKHVQEALRQYSKRATTIVVAHRLSTIKEADMIAVVKEGVVVEYGSHDTLMASQANGLYASLVRVETEANAISGYR* 1329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00203 1328 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1079 1315 IPR003439 GO:0005524
Pte19g00203 1328 Pfam ABC transporter 633 677 IPR003439 GO:0005524
Pte19g00203 1328 SUPERFAMILY ABC transporter transmembrane region 745 1230 IPR036640 GO:0005524|GO:0016020
Pte19g00203 1328 Gene3D - 1077 1319 IPR027417 -
Pte19g00203 1328 SUPERFAMILY ABC transporter transmembrane region 277 600 IPR036640 GO:0005524|GO:0016020
Pte19g00203 1328 Gene3D ABC transporter type 1, transmembrane domain 930 1075 IPR036640 GO:0005524|GO:0016020
Pte19g00203 1328 Gene3D ABC transporter type 1, transmembrane domain 685 923 IPR036640 GO:0005524|GO:0016020
Pte19g00203 1328 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 290 580 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte19g00203 1328 MobiDBLite consensus disorder prediction 1 59 - -
Pte19g00203 1328 ProSitePatterns ABC transporters family signature. 1218 1232 IPR017871 GO:0005524|GO:0016887
Pte19g00203 1328 FunFam ATP-binding cassette transporter, subfamily B, member 2, group MDR/PGP protein PpABCB2 930 1070 - -
Pte19g00203 1328 Pfam ABC transporter 1097 1245 IPR003439 GO:0005524
Pte19g00203 1328 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 759 1043 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte19g00203 1328 Pfam ABC transporter transmembrane region 759 1027 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte19g00203 1328 Pfam ABC transporter transmembrane region 290 562 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte19g00203 1328 Gene3D ABC transporter type 1, transmembrane domain 276 604 IPR036640 GO:0005524|GO:0016020
Pte19g00203 1328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 606 671 IPR027417 -
Pte19g00203 1328 CDD ABC_6TM_Pgp_ABCB1_D1_like 289 588 - -
Pte19g00203 1328 SMART AAA_5 642 777 IPR003593 GO:0016887
Pte19g00203 1328 SMART AAA_5 1106 1298 IPR003593 GO:0016887
Pte19g00203 1328 MobiDBLite consensus disorder prediction 1 38 - -
Pte19g00203 1328 CDD ABC_6TM_Pgp_ABCB1_D2_like 746 1061 - -
Pte19g00203 1328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1075 1316 IPR027417 -
Pte19g00203 1328 CDD ABC_MTABC3_MDL1_MDL2 1079 1316 - -
Pte19g00203 1328 FunFam ABC transporter B family member 1 1068 1319 - -
Pte19g00203 1328 Gene3D - 605 670 IPR027417 -
Pte19g00203 1328 PANTHER ABC TRANSPORTER B FAMILY 723 1317 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00203 Pte-Chr19 1566980 1573227 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00203 269 671 Calmodulin-binding Proteins AT2G36910 39.950 5.51e-87 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00203 K05658 - cpap:110818473 1311.59