Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00199 ATGGCGATTTTGGAGCAAAAAATGCCGAATCTCGATGGTCATCTACTTGTGGAGTACAGTGACACTGAAACTGATTGTTCCGACATTGACTATGATTCTGATGAATCGGAAAGTGATCCAAGCTACGACCTTCGTCTTGAAGAGACCCATACCAAGTTGTCATACTTATCGATCAAGAAGAAACAACGTAGGCCTCGTGCTGTACAACACCAAGTGGGCATCAATGGCGTGACAGAAGTAGATTTGACAGATTTGTTTGATGAAAATGATGAGAAGACTTGTGAAATGGTTAAGCGATTGATCCGAGATGGACAGCTAGAGAAGCTGAAAGTGGACCAGTGCAAGGTTTATTTGAGGAAGAATGGTTTGAGGCGGACTGGCAACAAAAACACTCTCATTCAGCGAATCAATGAGCACTGCGAGCTTATAAATGATGGTGGGGAGAAGAAGTACCCAGCATATAGTTTTTTTTTGAACTGTAAAGGTGATGCATGCAAGGGTGATGTTGTTTTGTTCGAGCAAAATGTATATGACAAGTTCAACTTAGCTTCCCGGAGCGCCAGTGGTCCACCATTAGGCAAAAGAACTGTTGCAGGCCGAATAGTCCATGAAAGCTATGGTGAAGCCAAACAACAACATACATTCACTATTGAAGTACTCTGGAGCAAGGGGGAGAGACCACTTCCTCCGCTTCATCCCCTACTCATCAAGGGTCGAAATCTTTACCGACTGAAGACCATGAGACAGAAATGGGAAGATGAAGGGGAGAGGCTGAAGATTTTGAAAGAAAAACACTCGAGAGGATCTCATGCTAGGTCTGATAGAGAAGCAAGGATGCATGAAAGAGAAAAGAGGGAAATTCTCAAGGCAGAGAGGAAGCCGAAGAAAGAGGAGGCAAAAAAGAACCAATCTTTAACATGCCCAAAACTCGGGGGATCAACATCTCAACCTGGTCTGTCTTTTAATTCAGTGACATCTGCGATACCGTCTCACCAATTTGCTAAATCCTATCCTTCTCAAGAAACCATAATGAGGCCTCAGCAAATGAGATATTCTCGTACTTTAGAACAACAATCACGTCTGAGTTACCAACCATTTGCTGTCACTGACTCTAAAAAACCACCAACAGAATCTGATCATAAGTACAATGTAGTGGATCACTGGCATAGGGGCTCAGATTCTTCAAACCAGAGCTCCAGCAGTTTTAGGGAAATCTGGACTGACTTTTGTCCGATTAATCCGCAAGGTGCTGCAAATGTACACTCTTGCTTCAGTAGGCAAAATTGGTGTGCAGAGAGGACCAACTATATACAACCTCTGAAACCTCCGACGAGAGTGAACTACCCTGCCCCACTGATGCCAAGGAGAGATGACTGCACGCAAAAGAAGTTGTGCAGATACTTTTCTCAAGGTAGGTGCTACTATGGAGAAAACTGCAAATACTCTCATGAGTTAAGATAA 1461 0.4353 MAILEQKMPNLDGHLLVEYSDTETDCSDIDYDSDESESDPSYDLRLEETHTKLSYLSIKKKQRRPRAVQHQVGINGVTEVDLTDLFDENDEKTCEMVKRLIRDGQLEKLKVDQCKVYLRKNGLRRTGNKNTLIQRINEHCELINDGGEKKYPAYSFFLNCKGDACKGDVVLFEQNVYDKFNLASRSASGPPLGKRTVAGRIVHESYGEAKQQHTFTIEVLWSKGERPLPPLHPLLIKGRNLYRLKTMRQKWEDEGERLKILKEKHSRGSHARSDREARMHEREKREILKAERKPKKEEAKKNQSLTCPKLGGSTSQPGLSFNSVTSAIPSHQFAKSYPSQETIMRPQQMRYSRTLEQQSRLSYQPFAVTDSKKPPTESDHKYNVVDHWHRGSDSSNQSSSSFREIWTDFCPINPQGAANVHSCFSRQNWCAERTNYIQPLKPPTRVNYPAPLMPRRDDCTQKKLCRYFSQGRCYYGENCKYSHELR* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00199 486 ProSiteProfiles SAP motif profile. 106 140 IPR003034 -
Pte19g00199 486 SUPERFAMILY CCCH zinc finger 461 484 IPR036855 GO:0046872
Pte19g00199 486 SMART sap_9 106 140 IPR003034 -
Pte19g00199 486 MobiDBLite consensus disorder prediction 263 303 - -
Pte19g00199 486 MobiDBLite consensus disorder prediction 263 318 - -
Pte19g00199 486 Pfam CCCH-type zinc finger 463 483 IPR041367 -
Pte19g00199 486 SUPERFAMILY SAP domain 97 141 IPR036361 -
Pte19g00199 486 Gene3D - 440 486 - -
Pte19g00199 486 ProSiteProfiles Zinc finger C3H1-type profile. 460 486 IPR000571 GO:0046872
Pte19g00199 486 SMART c3hfinal6 460 485 IPR000571 GO:0046872
Pte19g00199 486 PANTHER SAP DOMAIN-CONTAINING PROTEIN 21 485 - -
Pte19g00199 486 Pfam SAP domain 106 139 IPR003034 -
Pte19g00199 486 Gene3D SAP domain 105 144 IPR036361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00199 Pte-Chr19 1546214 1549409 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte19g00199 SAP 2e-09 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00199 - - vri:117921713 398.282