Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00196 ATGCAGCATCAGAGATTGAAGCAGCAACAACAGCAAGCGTTGATGCAACAGGCCCTCATGCAACAACAGTCTATCTACCACCCTGGTCTATTAGCTCCTCCCCAGATTGAGCCTATTCCAAGTGGGAATTTGCCTCCTGGATTTGATCCCAGTACTTGCCGAAGTGTGTATGTGGGAAACATCCATCCACAAGTGACTGAGCCACTTTTGCAAGAGGTTTTCCAAAGTACTGGCCTGATAGAAGGGTGTAAACTAATCAGGAAAGAGAAGTCATCCTATGGGTTTGTTCACTACTATGATCGTCGAAGTGCAGCTATTGCTATATTGTCTCTCAATGGAAGGCATCTGTTTGGACAGCCCATCAAAGTCAACTGGGCATATGCTAGTGGTCAGAGGGAAGACACATCAGGTCATTATAACATTTTTGTCGGGGATCTCAGTCCTGAGGTTACTGATGCTACGTTGTTTGCATGCTTTTCTGTATATCCCAGTTGTTCAGACGCAAGGGTTATGTGGGACCAGAAAACTGGACGTTCTAGAGGATTTGGTTTTGTTTCCTTCCGCAGCCAGCAGGATGCTCAGAGTGCCATTAATGATTTGACTGGTAAGTGGCTTGGTAGTAGGCAAATCCGCTGTAACTGGGCCACAAAAGGAGCTGGTGCAAATGATGATAAACAAAGCTCAGACTCCAAAAGTGTGGTTGAACTAACAAATGGATCATCAGAAGAGAACAAAGAGGCAACTAACTGTGAGGCTCCTGAGAACAATCCTCAGTACACGACAGTTTATGTGGGCAATCTTGCTCCAGAGGTGACCCAGCTTGATCTCCACCGCTACTTCCATTCTCTTGGTCCTGGAACAATAGAAGAAGTCCGTGTTCAACGAGATAAGGGATTCGGTTTTGTGAGATACAGTACGCATGCAGAAGCTGCTTTAGCCATTCAGATGGGCAATGCTCAGCCCTACCTCTTTGGCAAACAAATTAAGTGTTCATGGGGGAGCAAGCCAACTCCACCTGGAACTGCGTCAAACCCTCTTCCCCCTCCTGTAGCTGCACCTCTGCAAGGCCTCTCTGCAACAGACCTATTTTCTGGATATGAGCGACAACTGGCAATCAGCAAGATGGGAGGTGTCCATTCCCTGATGCAGTCGCAGGGTCAGCTTCCCCTTAAGCAGGCAACAATAGGAGGAAGCCAAGCAATATATGATGGTGGTTTTCAGAATGTTGCTGCTGCCCAGCAGCTGATGTACTACCAGTAA 1260 0.4722 MQHQRLKQQQQQALMQQALMQQQSIYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHPQVTEPLLQEVFQSTGLIEGCKLIRKEKSSYGFVHYYDRRSAAIAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGANDDKQSSDSKSVVELTNGSSEENKEATNCEAPENNPQYTTVYVGNLAPEVTQLDLHRYFHSLGPGTIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQPYLFGKQIKCSWGSKPTPPGTASNPLPPPVAAPLQGLSATDLFSGYERQLAISKMGGVHSLMQSQGQLPLKQATIGGSQAIYDGGFQNVAAAQQLMYYQ* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00196 419 SMART rrm1_1 140 213 IPR000504 GO:0003723
Pte19g00196 419 SMART rrm1_1 55 124 IPR000504 GO:0003723
Pte19g00196 419 SMART rrm1_1 261 331 IPR000504 GO:0003723
Pte19g00196 419 Gene3D - 237 339 IPR012677 -
Pte19g00196 419 MobiDBLite consensus disorder prediction 218 254 - -
Pte19g00196 419 CDD RRM1_PUB1 56 126 - -
Pte19g00196 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Pte19g00196 419 CDD RRM2_PUB1 138 217 - -
Pte19g00196 419 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 43 338 - -
Pte19g00196 419 SUPERFAMILY RNA-binding domain, RBD 253 342 IPR035979 GO:0003676
Pte19g00196 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 122 IPR000504 GO:0003723
Pte19g00196 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 319 IPR000504 GO:0003723
Pte19g00196 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 211 IPR000504 GO:0003723
Pte19g00196 419 SUPERFAMILY RNA-binding domain, RBD 38 132 IPR035979 GO:0003676
Pte19g00196 419 Gene3D - 136 232 IPR012677 -
Pte19g00196 419 Gene3D - 1 135 IPR012677 -
Pte19g00196 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 335 IPR000504 GO:0003723
Pte19g00196 419 MobiDBLite consensus disorder prediction 220 254 - -
Pte19g00196 419 FunFam Oligouridylate-binding protein 1C 237 339 - -
Pte19g00196 419 FunFam oligouridylate-binding protein 1-like isoform X2 137 232 - -
Pte19g00196 419 FunFam oligouridylate-binding protein 1B-like isoform X2 1 136 - -
Pte19g00196 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 128 IPR000504 GO:0003723
Pte19g00196 419 SUPERFAMILY RNA-binding domain, RBD 133 220 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00196 Pte-Chr19 1519259 1524217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00196 55 322 Eukaryotic Initiation Factors Gene Family AT4G34110 28.674 2.46e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00196 K13201 - qsa:O6P43_018428 734.176