Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00172 ATGGAAACAGTGGCTGGAGTCGAGGGAAATGACGAGGGGAGAGTTGGAGATAGTGGGGTTGATAAGAGTAGTTCTAATTTGTCATCACCGACGCAGATTGCCAACCCAGTTGTCTACAAGCTCGTTCGGGTAGCTTGCGATGGGAGATTAGTACCTGCAACAGAAGATGAAGTAATGGAAGTTGAGGATTTTCTTGAAAATGAGAAAAGTGGAACATCTGCTGTCATTGAAGCTCCACTTAGTGTTGGATGTATATCATCTGCAAGATATTCCTCCGAGAAGCTTCAGATAGAATCCTCTGAAGGTGCATCCCATTCCCGCAATGGTGAGTTTGCACCACAAGAGAAGTCTGTGTCACTGTTTGGGTCGGGTTTGAATGTTAGTCATGGGAAACAACCTGCGAATTGCCGTGAGCCGTGCATACTATCAAATCAACCTTTGCAAAGTGGACCCTCGGATGCTGTTCTCATGAAACCTGATTTTTCTATGCTAAAGGAAGAAATATGCTTGGAGAAGCTTTCAATAAGAGAACTACACGAACTGTTCAAAGTGACTTTTGGACGTGAGACTACTGTCAAAGATAAGCAGTGGCTTAAGAGGAGGATCTCCATGGGATTAACTAATTCATGTGATGTTTCAGCAACTCACTTTGTAGTTGAAGCAAACAGATTGGTCAAAAAAACTGGGGAAGAGTGTTGCAAGAGTATTCATGAAAATCTGGTCAAAGATGTGACAGTTGTATCCAGAGACATCAGTTTTATGGATTTATCATCTCCACACGGTGGTTACCCTGAGGATGATCAAATCGTCATTGAAAAGAGATTGAAGAACCAAAGTATCGAACATGATTGTGGAAATGAGAATATTCAGGCAGAAAATAGAGCTGCAAAAAGAATTCGAAAACCAACCAAAAGATATATTGAAGAGCTTTCTGAAGCTGAATCCCGAGACTCTAACCCAAAGTTGCTGAACTTAAAATCTATAAAACCATGTGTAAAATTTGTCAGTCATGATCCTTCTGAGATGAGAATGCTTGTCACTAGGATAGATTCTCTTGGAGGTTCTGAAGTTCACATTCCATATCTTTCTCGTATTAGAAGATGCCGTCCAAGGAGAAATATGAATTCCCTTATGAAATACCATTCTGCTGGGTCAGGTTTGGCCGATCGAAATGCGACATTTGGATTGTGTGGTCGTCAAGCTGATTTTGGGAATGCAGTTGAAGTCATGGAATTCAAATCACCACTGAGAAAGACTCAGCAGCAGCTTATTGTAGGAAGAGAGAAAGACAAGCAGGGGTTGAATACGGAAAGTTCTGAGGTTGGAACAGAGTTGAGACCCAAGGATGCAGATTTTTCTCATTATCATTCAGATGATAACATAGCCACTATCCCCACATCCAAAGGAGGAATTAGAAGAAAACATCATCGAGCCTGGACTCTTGTCGAGGTCATGAAGTTAGTGGATGGTGTGTCAAGGTGTGGTCCAGGGAGATGGTCTGAGATTAAACGGCTAGCATTTGCATCTTATTCATATCGTACCTCTGTTGATCTCAAAGACAAATGGAGGAACTTGCTTAAAGCTAGCTTTGCACAGTCGCCTGCTGATGATGGGGTAAATTCTCGCAAGCAAGGTGCAGTTCCCATCCCCGAGACAATTTTGGTGAAAGTGAGAGAGCTTGCTATATTGAATGATCAGGTCCCCAGAAAATTTCATTTCAACAAGCCAGCTTTGGAAACAACTAAAGATAATACATCAGGCTATTTATAG 1770 0.4186 METVAGVEGNDEGRVGDSGVDKSSSNLSSPTQIANPVVYKLVRVACDGRLVPATEDEVMEVEDFLENEKSGTSAVIEAPLSVGCISSARYSSEKLQIESSEGASHSRNGEFAPQEKSVSLFGSGLNVSHGKQPANCREPCILSNQPLQSGPSDAVLMKPDFSMLKEEICLEKLSIRELHELFKVTFGRETTVKDKQWLKRRISMGLTNSCDVSATHFVVEANRLVKKTGEECCKSIHENLVKDVTVVSRDISFMDLSSPHGGYPEDDQIVIEKRLKNQSIEHDCGNENIQAENRAAKRIRKPTKRYIEELSEAESRDSNPKLLNLKSIKPCVKFVSHDPSEMRMLVTRIDSLGGSEVHIPYLSRIRRCRPRRNMNSLMKYHSAGSGLADRNATFGLCGRQADFGNAVEVMEFKSPLRKTQQQLIVGREKDKQGLNTESSEVGTELRPKDADFSHYHSDDNIATIPTSKGGIRRKHHRAWTLVEVMKLVDGVSRCGPGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASFAQSPADDGVNSRKQGAVPIPETILVKVRELAILNDQVPRKFHFNKPALETTKDNTSGYL* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00172 589 SUPERFAMILY Homeodomain-like 477 536 IPR009057 -
Pte19g00172 589 MobiDBLite consensus disorder prediction 427 452 - -
Pte19g00172 589 Gene3D - 466 572 - -
Pte19g00172 589 SMART sant 475 528 IPR001005 -
Pte19g00172 589 CDD SANT_TRF 477 527 - -
Pte19g00172 589 ProSiteProfiles Myb-like domain profile. 479 526 IPR001005 -
Pte19g00172 589 MobiDBLite consensus disorder prediction 1 30 - -
Pte19g00172 589 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 471 530 IPR017930 -
Pte19g00172 589 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 22 574 - -
Pte19g00172 589 Pfam Myb-like DNA-binding domain 478 526 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00172 Pte-Chr19 1368513 1374824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00172 479 536 Single Myb Histone (SMH) Gene Family AT1G17520 45.902 1.10e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pte19g00172 Myb_DNA-binding 1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00172 - - qsa:O6P43_018360 574.704