LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte19g00159	ATGGGAAACCCGAAGCAGAAGTGGAAGACGGAGGAGGAAGCAGCTTTACTGGCCGGAATAGCGAAGCATGGGCCTGGAAAGTGGAAGAACATTCTCACCGACCCTGAGTTTGCTCCCTTTCTCACTCACCGTTCCAACATTGACCTCAAAGACAAATGGCGGAATTTGAGTGTAAGTGATTCTTGCCAAGGTTCTAAAGAAAGGTCAAGAAATCCAAAGCCCAAAGCTTTACCAGCTACCAATGTACAGACGCCTACTCCTGTTCCTGGCCAATCACGTGATCTCACTATAGCTTCTGATACCGTTGCAGACAATTCCCCTTTGATTGAACATGAAGGAAAGGAACCTCCAGGGAACTATGCCATTTTCGATGCTCTGTCTACTATAAAAGACCCTAATGGTTCTGATGTGAATGCGATCTATAAGTTCATTGAGCAAAAATATGGTGTATCTCATAATTTCAGAAAGCAGCTAGGTACAAAGTTGAAAAGGCTTGTAGCATCAGGAATACTTGATAAGGTGGAAAATAATTACAAGCTTAAAAACGAAAACTCCATGGGAACGGAAACAAAACGACCTGAACCAAAACAGAAGGATTTCAGACCAGGACCAATCCAAATTCGTGCCCCAACAACAGCTATGGAAGCAGGTGTTGCCGGTGCCAAGCTTCTTGCCTTAGCAGAGGAAAAAACAGTTGCAGCTGCTGAAGCTGCCTATACTTATATAGAAATTTCAAATTTGGCAGAGGAAACCTACTCCAAGTTACAGCTACTCAGAGAGATCTATGAACAATGTTCCCGTGGTGAGATATTTCTATTAGCATAG	825	0.4339	MGNPKQKWKTEEEAALLAGIAKHGPGKWKNILTDPEFAPFLTHRSNIDLKDKWRNLSVSDSCQGSKERSRNPKPKALPATNVQTPTPVPGQSRDLTIASDTVADNSPLIEHEGKEPPGNYAIFDALSTIKDPNGSDVNAIYKFIEQKYGVSHNFRKQLGTKLKRLVASGILDKVENNYKLKNENSMGTETKRPEPKQKDFRPGPIQIRAPTTAMEAGVAGAKLLALAEEKTVAAAEAAYTYIEISNLAEETYSKLQLLREIYEQCSRGEIFLLA*	275

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte19g00159	274	Pfam	Myb-like DNA-binding domain	5	56	IPR001005	-
	Pte19g00159	274	SUPERFAMILY	"Winged helix" DNA-binding domain	116	192	IPR036390	-
	Pte19g00159	274	MobiDBLite	consensus disorder prediction	76	94	-	-
	Pte19g00159	274	ProSiteProfiles	Myb-like domain profile.	5	57	IPR001005	-
	Pte19g00159	274	FunFam	Telomere repeat-binding factor 1	2	58	-	-
	Pte19g00159	274	MobiDBLite	consensus disorder prediction	182	204	-	-
	Pte19g00159	274	SMART	sant	4	59	IPR001005	-
	Pte19g00159	274	MobiDBLite	consensus disorder prediction	185	201	-	-
	Pte19g00159	274	ProSiteProfiles	Linker histone H1/H5 globular (H15) domain profile.	104	182	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Pte19g00159	274	SMART	h15plus2	102	177	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Pte19g00159	274	MobiDBLite	consensus disorder prediction	60	94	-	-
	Pte19g00159	274	Pfam	linker histone H1 and H5 family	119	175	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Pte19g00159	274	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	1	61	IPR017930	-
	Pte19g00159	274	SUPERFAMILY	Homeodomain-like	2	58	IPR009057	-
	Pte19g00159	274	Gene3D	-	112	198	IPR036388	-
	Pte19g00159	274	Gene3D	-	8	84	-	-
	Pte19g00159	274	FunFam	Telomere repeat-binding factor 1	8	85	-	-
	Pte19g00159	274	CDD	SANT_TRF	6	56	-	-
	Pte19g00159	274	PANTHER	SINGLE MYB HISTONE 4	1	273	IPR044597	GO:0003691

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte19g00159	Pte-Chr19	1230701	1234935	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte19g00159	1	275	Single Myb Histone (SMH) Gene Family	AT1G72740	43.310	4.01e-59	188

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Pte19g00159		Linker_histone	6.3e-11	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte19g00159	K09422		-	tcc:18596170	266.159