Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00156 ATGCCACCAGAAGCCCTTGAGATTACACGGAAGTTCATGAATAAACCTGTGAGAATCCTGGTGAAGCGTGATGAGCTCACCCTTGAAGGTATCAAGCAGTTTTATGTCAATGTTGATAAGGAGGAATGGAAGCTGGAGACATTATGTGATCTCTATGAGACACTTGCAATCACGCAAAGTGTCATTTTTGTGAACACCCGTCGAAAGGTGGACTGGCTAACTGATAAGATGCGAAGCAATGATCACACAGTCTCGGCCACCCATGGTGACATGGACCAGAATACCCGTGACATTATTATGCGTGAATTCCGATCTGGCTCTTCCCGTGTGCTCATCACCACTGATCTCTTGGCCCGTGGTATTGATGTGCAGCAAGTATCTCTTGTGATAAACTATGATTTGCCAACCCAGCCTGAAAACTATCTTCATCGTATTGGACGAAGTGGAAGGTTTGGGAGAAAAGGTGTGGCAATAAACTTTGTGACCATGGAAGATGCCAGAATGCTGTCGGATATCCAGAAGTTCTATAATGTGGTCGTGGAGGAGCTGCCGTCAAATGTAGCTGACCTCCTCTAA 576 0.4583 MPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTMEDARMLSDIQKFYNVVVEELPSNVADLL* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00156 191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 186 IPR027417 -
Pte19g00156 191 Gene3D - 23 191 IPR027417 -
Pte19g00156 191 Pfam Helicase conserved C-terminal domain 44 152 IPR001650 -
Pte19g00156 191 CDD SF2_C_DEAD 31 161 - -
Pte19g00156 191 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 30 191 IPR001650 -
Pte19g00156 191 FunFam Eukaryotic initiation factor 4A-III 25 191 - -
Pte19g00156 191 SMART helicmild6 71 152 IPR001650 -
Pte19g00156 191 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00156 Pte-Chr19 1209244 1209819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00156 1 192 Eukaryotic Initiation Factors Gene Family AT1G72730 95.833 1.10e-135 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00156 K03257 - gmx:100777628 375.17