Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00107 ATGACAGCAATAAGTAGTCGTGGTATCAACTCCTCAACGTGTTCAGCTCATTCACCATCTTCGGATACCTTGACACAAGAAGAAACTCAACAGAAAATAGCAAAAAGACCCAGAGACACCAGCAGGCACACGGTTTACCATGGAGTCAGAAAAAGGTACTGGGGCAAATGGGTGTCAGAAATTCGCGAGCCTCGCAAGAAATCTCGTATCTGGCTCGGTACTTTTGAGACAGCAGAAATGGCTGCAAGAGCGCATGATGTGGCTGCTCTGAGCATTAAAGGTAACTCTGCAGTTCTAAATTTTCCGGACATAGCTGAGTTGTTGCCAAGACCAGTTTCCTTAACCCCACGTGACATCCAAGCTGCTGCTTCAGCTGCAGCTGCAATGGTCACATTTGATCCAGTACAATCATCCTCCTCATCATCGTTGTCGTCTTTGTGGATCTCAGAAGCATCGGAGTCAGAAGGGTTGGATGAAATTGTTGAGTTGCCAAATATAGAAGGCAGTCTTGACTCAGAAGATTCAGCAAATGAGTTCATCATGATGGACGACACAGGAGACTGGTGGGTGTATCCACCCATGGTGCTAGAGGACGACGCTGAATTGTGTGGTGATTTCTTTGAGCCGCTGTCAACAGTTCAACGCTCAAATAATCCAAGCAAACATGAAAGACAAGTTTGA 681 0.4611 MTAISSRGINSSTCSAHSPSSDTLTQEETQQKIAKRPRDTSRHTVYHGVRKRYWGKWVSEIREPRKKSRIWLGTFETAEMAARAHDVAALSIKGNSAVLNFPDIAELLPRPVSLTPRDIQAAASAAAAMVTFDPVQSSSSSSLSSLWISEASESEGLDEIVELPNIEGSLDSEDSANEFIMMDDTGDWWVYPPMVLEDDAELCGDFFEPLSTVQRSNNPSKHERQV* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00107 226 MobiDBLite consensus disorder prediction 1 42 - -
Pte19g00107 226 Pfam AP2 domain 44 94 IPR001471 GO:0003700|GO:0006355
Pte19g00107 226 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Pte19g00107 226 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Pte19g00107 226 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Pte19g00107 226 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Pte19g00107 226 MobiDBLite consensus disorder prediction 1 28 - -
Pte19g00107 226 CDD AP2 46 103 IPR001471 GO:0003700|GO:0006355
Pte19g00107 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 170 - -
Pte19g00107 226 FunFam Ethylene-responsive transcription factor 2 44 103 - -
Pte19g00107 226 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677
Pte19g00107 226 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00107 Pte-Chr19 900029 901129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00107 25 193 AP2-EREBP Transcription Factor Family AT5G11590 54.396 5.67e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte19g00107 AP2 7.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00107 K09286 - qsa:O6P43_018193 236.884