Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00102 ATGTCTAGACCATTGGAACATGATTACATAGGCTTGACAGATAATTCTTCAATGGAAAGAAGCTCTGGCAAGGTATCCTCAAATCTCTCAACTGAGGATGAGAAGGGCTCTTGTTTTAACTTGAAGGAGACCGAGCTTAGACTTGGCTTGCCTGGTTCTCCGTCTCCTGACAGAAAACCATCAACTGGGGTCTCTCTTTTTGGCAAGGATTTGCACGATGGGTACTCTGTGACAACCACCCCTTTGAAGAACCTGTTTTCTGGCGCTAAGAGAGGCTACTCTGACGCACTAGACTCTGCTTCTGCGAAATGGGTTTTCACTGTGAACGATGGATCCGAAGTTGAAGTAGGAAATGGAGCTGCTTTATTATCACCAAGAACTATGGATGGTGGAAAGCCGCTTGGTGTTTTAGAGGGTAAAAGTAATTCTCAGCAGGCTTCTGCACAAGCCAAAACCATGAAAGAGGTTGGCATTGTTTCGCAATCTTCAAAGCCACAGCAGAAGACAACGCATCAGGTTTCAGCTGCAAATGACAATAATAGCGCCCCTGCTGCAAAGGCACAGGTTGTGGGATGGCCGCCAATCAGATCTTTTCGGAAGAACAGCATGGCCTCTAATTTGGCGAAAAACAACAACGATGATACTGAGGCCAAAGCAGAATTAGGTTGTCTCTATTTAAAAGTCAGCATGGATGGTGCGCCATACCTAAGAAAGGTTGATCTGAAAACCTACAGCAACTATGCCGAACTCTCATCTGCTCTTGAGAAGATGTTCTGCTGCTTTACAATTGGTCAATGCAGCTCTTATGGACTTCCTGGGAAAGATGGCCTCAGTGAGAGTTGTTTGAAGGATCTGCTTCATAGTTCTGAATATGTTGTTACGTATGAAGATAAGGATGGTGACTGGATGCTTGTTGGTGACGTCCCCTGGGGGATGTTTATCAATTCATGTAAGAGGCTAAGAATCATGAAAGGTTCTGAAGCAATTGGCTTAGCTCCAAGCGCCATGGAGAAATCGAAGAACCGGAACTAA 1032 0.4506 MSRPLEHDYIGLTDNSSMERSSGKVSSNLSTEDEKGSCFNLKETELRLGLPGSPSPDRKPSTGVSLFGKDLHDGYSVTTTPLKNLFSGAKRGYSDALDSASAKWVFTVNDGSEVEVGNGAALLSPRTMDGGKPLGVLEGKSNSQQASAQAKTMKEVGIVSQSSKPQQKTTHQVSAANDNNSAPAAKAQVVGWPPIRSFRKNSMASNLAKNNNDDTEAKAELGCLYLKVSMDGAPYLRKVDLKTYSNYAELSSALEKMFCCFTIGQCSSYGLPGKDGLSESCLKDLLHSSEYVVTYEDKDGDWMLVGDVPWGMFINSCKRLRIMKGSEAIGLAPSAMEKSKNRN* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00102 343 Gene3D - 217 337 - -
Pte19g00102 343 MobiDBLite consensus disorder prediction 159 186 - -
Pte19g00102 343 SUPERFAMILY CAD & PB1 domains 223 324 - -
Pte19g00102 343 MobiDBLite consensus disorder prediction 1 36 - -
Pte19g00102 343 ProSiteProfiles PB1 domain profile. 223 325 IPR000270 GO:0005515
Pte19g00102 343 Pfam AUX/IAA family 43 333 IPR033389 -
Pte19g00102 343 MobiDBLite consensus disorder prediction 159 184 - -
Pte19g00102 343 FunFam Auxin-responsive protein 218 335 - -
Pte19g00102 343 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 40 330 IPR003311 GO:0005634|GO:0006355
Pte19g00102 343 MobiDBLite consensus disorder prediction 14 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00102 Pte-Chr19 859863 862776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00102 227 333 B3 DNA Binding Superfamily AT4G23980 31.776 6.57e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pte19g00102 AUX_IAA 7.5e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00102 K14484 - qsa:O6P43_018182 502.286