Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00098 ATGTATCACTGCACTCAGAATAATACTGCACCTCTGCTAATGGGCGTGGACATGCCTAACAATCATCCTCACAGTTCTACTCACACCAAGGACTATTTTGCTTCTCCAGCTCTTTCTCTCAGCCTAGCAGGGATTTTTCGACATGCGCAGCCGGCTGCATCGGTGGATGAAGTGGCCATGGAGGTTGAGGAGGGTGATGAAGGAAGTGGAGGAGGGAAGAGAGATGATACAGTAGAGATTAGTAGTGAGAACTCGGGACCTGCATCAAGATCAAAGTCAGATGATTATTTTGATGGAGAAGGAGATGAAGATGATGGAGATGGAGACATCAAGAACAAGAAGAAAAGGAAGAAGAATCACAGGCACACTGCTGAGCAAATTAGAGAGATGGAAGCGCTTTTTAAAGAGTCACCTCACCCAGATGAGAAGCAGAGACAACAACTCAGCAAGCAATTGGGTCTGCATCCGCGGCAAGTAAAATTCTGGTTTCAGAACCGTCGAACCCAAATCAAGGCTATACAAGAGCGTCATGAAAATTCGTTGTTGAAATCAGAACTGGATAAACTTCGAGACGAAAATAAGACCATGAGAGAAACCATTAACAAGGCTTGTTGCCCCAACTGTGGCACTAATGCAACCATCGGCAGAGGAGCTGCTATGAACTCGGAAGAACAACAACTTCGTATTGAAAATGCCAAGCTCAAAGCTGAGGTGGAGAAACTCCGATCAGCACTGGTGAGGTATCCGCAAGGAACAGCAGCATCGCCTTCATCTTCTGCAGGAAATGACCAAGAGCACAGAAGGTCGTTGGATTATTACAGTGGAATTTTTGTTGAGAAGACAAAAATTGTAGAACTTGTTAACCAAGCAGTTGATGAGCTAATCAAGATGGCTACTTTTGGGGAACCATTGTGGATTCGTAGTGTTGAAACTGGACGCGAAATACTTAACTATGATGAGTACACGAAAGAGTTCAACACTTCCGAAAGTTCAAGCAAACCAAAACCAAAGAGATCCATTGAGGCATCAAGAGAAACAGGAGTCGTTCTAGTCGATCTTCCTCACCTTGTCCAATGCTTCATGGACGTGAATCATTGGAAGGAAATGTTTCCATGCTTGGTCTCAAAGGCTGCAACAGTTGAAGTTATCAGTGATGGTGATGGAGCTAATAGAAATGGTGGGGTGCAACTGATGTTTGCTGAACTGCAAATGCTTACACCAATAGTGCCCACCAGAGAAGTTTATTTTGTCAGATACTGCAAGCAATTGAATACTCAACAGTGGGCAATAGTTGATATTTCGATCGATAAAGTTGAAGACAACATAGACGCATCCCTCGTGAAATGCAGGAAGCGCCCATCTGGTTGCATTATTGAGGACAAGTCAAATGGCCATTGCAAGGTGACATGGGTGGAGCATCTTGAATGCCAGAAAAGTAGCATTCATACTATGTATCGCACTATTGTGAACAATGGTTTAGCATTTGGAGCAAGACATTGGATGGCAACATTGCAAGTTCAGTGTGAACGTCATATGTTCTCCATGGCAACATATGTTCCTTTGAAGGATTCAAATGGTGTTGCTACCCTGGCTGGGAGGAAAAGCATATTGAAGTTGGCACAGAGAATGACATGGGTTTTCTGTCATGCAATTGGTGCATCAAGCTATCACAACTGGAGCAGGATACCTACTAAAACAGGGGAAGATGTAAGGATCTGTTCCAGAAAGAACTTGAACGACCCTGGCGAACCTACTGGGGTGATACTCAGTGCAGTTTCTTCTGTATGGTTACCGGTCTCTCCTCAGGTTCTTTTTGATTTCTTGAGGGATGAAGCACATCGGAGTGAGTGGGATATTATGTCAAGTGGAGGGAAAGTTCAATCTGTAGCAAACTTAGCCAAAGGACAAGACAGAGGCAATGCAGTAGCCATCCAGTCAATGCAATCAAAGGAAAACAGAACATGGATACTGCAAGACAGCTACACAAACAGTTATGAATCGATGGTGGTTTATGCTCCTGTGGACATTACCGGAATGCAGTCTGTGATGACAGGATGCGATTCCAGCAATATTGCCATATTGCCTTCAGGATTTTCAATTCTTCCTGATGGTATCGAATCAAGGCCATTGGTGATTACATCAAGACAGGAGGAGAGGAGTACTGAAGGAGGGTCTTTGCTTACATTGGCGGTTCAGATCTGCACTAGTTTTTCTCCATCATCAAAGTTAACAAAGGAGTCAGTGGAGTCCATTAACACCGTTATATCTTGTACACTAGAAAATATCAAAACATGCTTGCAATGTGAGGATAGCTGA 2316 0.4378 MYHCTQNNTAPLLMGVDMPNNHPHSSTHTKDYFASPALSLSLAGIFRHAQPAASVDEVAMEVEEGDEGSGGGKRDDTVEISSENSGPASRSKSDDYFDGEGDEDDGDGDIKNKKKRKKNHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLHPRQVKFWFQNRRTQIKAIQERHENSLLKSELDKLRDENKTMRETINKACCPNCGTNATIGRGAAMNSEEQQLRIENAKLKAEVEKLRSALVRYPQGTAASPSSSAGNDQEHRRSLDYYSGIFVEKTKIVELVNQAVDELIKMATFGEPLWIRSVETGREILNYDEYTKEFNTSESSSKPKPKRSIEASRETGVVLVDLPHLVQCFMDVNHWKEMFPCLVSKAATVEVISDGDGANRNGGVQLMFAELQMLTPIVPTREVYFVRYCKQLNTQQWAIVDISIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVTWVEHLECQKSSIHTMYRTIVNNGLAFGARHWMATLQVQCERHMFSMATYVPLKDSNGVATLAGRKSILKLAQRMTWVFCHAIGASSYHNWSRIPTKTGEDVRICSRKNLNDPGEPTGVILSAVSSVWLPVSPQVLFDFLRDEAHRSEWDIMSSGGKVQSVANLAKGQDRGNAVAIQSMQSKENRTWILQDSYTNSYESMVVYAPVDITGMQSVMTGCDSSNIAILPSGFSILPDGIESRPLVITSRQEERSTEGGSLLTLAVQICTSFSPSSKLTKESVESINTVISCTLENIKTCLQCEDS* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00098 771 Coils Coil 220 244 - -
Pte19g00098 771 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 114 766 IPR042160 -
Pte19g00098 771 SMART HOX_1 114 177 IPR001356 GO:0003677
Pte19g00098 771 CDD START_ArGLABRA2_like 280 509 - -
Pte19g00098 771 CDD homeodomain 123 171 IPR001356 GO:0003677
Pte19g00098 771 Pfam START domain 287 510 IPR002913 GO:0008289
Pte19g00098 771 SUPERFAMILY Bet v1-like 539 733 - -
Pte19g00098 771 SUPERFAMILY Bet v1-like 279 510 - -
Pte19g00098 771 MobiDBLite consensus disorder prediction 60 125 - -
Pte19g00098 771 Pfam Homeodomain 116 171 IPR001356 GO:0003677
Pte19g00098 771 MobiDBLite consensus disorder prediction 66 80 - -
Pte19g00098 771 ProSiteProfiles 'Homeobox' domain profile. 113 173 IPR001356 GO:0003677
Pte19g00098 771 Gene3D - 286 511 IPR023393 -
Pte19g00098 771 ProSiteProfiles START domain profile. 276 513 IPR002913 GO:0008289
Pte19g00098 771 SUPERFAMILY Homeodomain-like 102 174 IPR009057 -
Pte19g00098 771 FunFam Homeobox-leucine zipper protein GLABRA 2 285 509 - -
Pte19g00098 771 FunFam Homeobox-leucine zipper protein HDG1 101 189 - -
Pte19g00098 771 Coils Coil 172 199 - -
Pte19g00098 771 Coils Coil 110 130 - -
Pte19g00098 771 SMART START_1 285 510 IPR002913 GO:0008289
Pte19g00098 771 Gene3D - 105 185 - -
Pte19g00098 771 ProSitePatterns 'Homeobox' domain signature. 148 171 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00098 Pte-Chr19 833881 839408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00098 80 770 Homeobox Transcription Factor Family AT1G79840 63.031 0.0 885
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte19g00098 START 3.5e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00098 K09338 - qsu:111988083 1172.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g00098 19 833881 839408 Pte19g00098 19 833881 839408 RCT