Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00070 ATGGGCGGGACTTCTTTGGCGGGCTTACAGGATCACGTGAAGTTGGCGAGAGAATATGCAGTTGAAGGAATATACGACACTTCCATAATCTTCTTCGATGGCGCAATTGCTCAGATTAACAAGCACCTGAACACGCTTGATGACCCTTCGATTCGAGCAAAATGGATGAACGTGAAGAAAGCCCTTACTGAGGAAATAGAAGCTGTAAAACAACTAGATCAAGAGAGAAGGGGTTTTAAAGAAAATCCAATAGGAAGACGTCCTCCTTCACCTCCAATTTCTGCTAAATCTTCATTTGTTTTTCAACCCTTGGATGAATATCCAACATCTTCAAATACTCCTATGGATGATCCTGATGTATGGAGGCCACCCAGTCGAGATATGACAAGCAGAAGATCTGGCAGGGCTGGTCAAGTGGGCACAAGGAAGTCACCTCAAGATAGTGTTTGGGCACGTGGTTCCTCAAGAGCTGGTACTACTGGTCGTGGTGCAAAAAATAGTAGTTCAAGTAGGGTGAGTTCAGGGGTTCGTTCATCAACAACGGCAAAGAAAGGAGCTGCTTCTGGAAAATCAAGCAAGACAGATTCATCTAATGGCGATTCTGAAGATGGTAAATCAAAGAGGGTACAATATGAGGGACCTGATCCTGAGTTAGCTGCAATGCTTGAAAGGGATATGCTCGAAACTACTCCCGGAGTGAAATGGGATGATATTGCTGGGCTAACAGAAGCAAAGAGGCTTTTGGAAGAAGCTGTTGTGCTACCTCTATGGATGCCCGAGTATTTTCAGGGTATTAGGAGACCGTGGAAGGGTGTTCTTATGTTTGGTCCTCCAGGTACAGGGAAGACTCTGCTGGCTAAAGCAGTTGCTACTGAATGTGGAACCACCTTTTTTAACGTTTCCTCAGCTACCCTTGCATCAAAATGGCGCGGGGAGAGTGAGCGGATGGTGCGTTGCTTGTTTGATCTTGCAAGAGCTTATGCTCCAAGCACTATTTTCATCGATGAGATTGATTCCCTCTGCAATGCTCGAGGTGCTTCTGGGGAACATGAATCATCTAGAAGGGTGAAATCTGAACTATTAGTTCAGGTAGATGGTGTAAGCAATAGTTCCACAAATGAGGATGGCACTCGTAAAATTGTCATGGTTTTGGCAGCCACTAATTTTCCATGGGACATCGATGAGGCACTGAGGAGGCGGCTGGAAAAACGTATTTATATTCCTCTTCCAAATTTTGAGAGTCGCAAGGATCTAATCCGCATCAACTTGAAGACAGTGGAGGTATCCGCTGATGTAAATGTAGATGAAGTTGCTCGTAGAACAGAGGGATATAGTGGAGATGATCTAACCAATGTCTGTCGAGATGCGTCGTTGAATGGTATGAGGCGTAAGATAGCTGGAAAAACTCGTGATGAGATCAAGAATATGCCCAAGGATGAGATATCAAAGGACCCTGTTGCCATGTGTGATTTTGAAGAAGCATTGAAGAAGGTCCAACCAAGTGTGTCTGCTGCAGATATCGAACGGCATGAAAAGTGGTTTATGGAATTTGGATCTGCGTAA 1563 0.4472 MGGTSLAGLQDHVKLAREYAVEGIYDTSIIFFDGAIAQINKHLNTLDDPSIRAKWMNVKKALTEEIEAVKQLDQERRGFKENPIGRRPPSPPISAKSSFVFQPLDEYPTSSNTPMDDPDVWRPPSRDMTSRRSGRAGQVGTRKSPQDSVWARGSSRAGTTGRGAKNSSSSRVSSGVRSSTTAKKGAASGKSSKTDSSNGDSEDGKSKRVQYEGPDPELAAMLERDMLETTPGVKWDDIAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSSTNEDGTRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKDLIRINLKTVEVSADVNVDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKVQPSVSAADIERHEKWFMEFGSA* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00070 520 PANTHER AAA DOMAIN-CONTAINING 25 519 - -
Pte19g00070 520 Gene3D - 410 496 - -
Pte19g00070 520 CDD Kp60-NTD 7 75 - -
Pte19g00070 520 FunFam Katanin p60 ATPase-containing subunit A1 410 496 - -
Pte19g00070 520 FunFam Katanin p60 ATPase-containing subunit A1 4 80 - -
Pte19g00070 520 MobiDBLite consensus disorder prediction 131 195 - -
Pte19g00070 520 ProSitePatterns AAA-protein family signature. 381 400 IPR003960 GO:0005524|GO:0016887
Pte19g00070 520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 514 IPR027417 -
Pte19g00070 520 Gene3D - 230 510 IPR027417 -
Pte19g00070 520 Pfam AAA+ lid domain 431 472 IPR041569 -
Pte19g00070 520 MobiDBLite consensus disorder prediction 74 213 - -
Pte19g00070 520 SMART AAA_5 268 411 IPR003593 GO:0016887
Pte19g00070 520 MobiDBLite consensus disorder prediction 196 213 - -
Pte19g00070 520 FunFam Katanin p60 ATPase-containing subunit A1 230 398 - -
Pte19g00070 520 Pfam ATPase family associated with various cellular activities (AAA) 272 409 IPR003959 GO:0005524|GO:0016887
Pte19g00070 520 Gene3D - 3 80 - -
Pte19g00070 520 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 520 IPR028596 GO:0008017|GO:0008568|GO:0051013
Pte19g00070 520 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00070 Pte-Chr19 598544 602913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00070 267 480 Calmodulin-binding Proteins AT3G56690 38.249 2.36e-34 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00070 K07767 - rvl:131335464 890.567