Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00058 ATGTGGGAGTTACTTGTTGACAGATCAAATACAGAAGAAGTTTTCAAGGTTGAGGGAGATTACAGAACTGAAATGAACTTTCAGGAGGAAGTTCATCCTGTGGCATTCAATGACATCAAGTCTGCGAATCTCTACTCTCAGCGAGCAAGCAGTTCAAACCCACAAAATAATTCTAGTTTTCACAAGGAAATGGCTATCGGAGATAACACTGCCAACCTATCTACTGAGGTAGACGATATCCTGCAATTGGCCTCAATGGAACAGGATGGAGATGCAGCAATCAACGATATCTTGGGCCTTACATTTGAAGAGGCCTCTCCGAGTTCGACAAATTTAGATGGACTGTTTCCTTCAGATATCAACAATATAGCAAGATCCAGCAGTTCTCAGGTCGAAAGTCAGGCTGCAACACCCAGTTTTTCAGATCATGGGCAAGCGCGCATAACTTCTTTATACACGAATACGGAGTCGCATGTAGACCTGTCTAAGTGTAGGGTGAATTCAAGCAGTGCTGGAAAGGATTTTGGGGCAAGTAATGTGAACACCAATAAAAGACGCAAGAAACCAGTGTCCACCAGTGAGAGCCAGGACTGCAAAGGCTGCAATTGCGAGATGTCCAGATGCTTGAAACTTTATTGTGAGTGCTTTAAAGCTGGAAGTTATTGTGATGGTCAATGCTCATGCGAAGTCTGCTACAACAGGAGCGACTATGAAGATATTGTTACAGACAAACGACAAATAATCGAAACTCGTAATCCGCTTGCATTTGCTCCCAAGGTTGTATATAATTTTGCCAGCACAAAGGAAGAAGAGAACTCTGCTACTTCATTCGCAGCCAAACATAGAAAAGGATGCAACTGCAAAAAGTCAAAGTGCTCGAAAAAATATTGTGAATGTTTTCAGGCTAAAGTTGGATGCTCTTTTGGCTGTCGATGTGTGGATTGTCAAAACTCTTTTGGCATAAGGACAGAAAATCCGAGGTCTGAGAAGTGGAAGCTTCCTCATGAGAGTTCGCACGCTACTGAGTGTAGACCTCAATGCATGAACATTGGGAGTACCAATCTCCTTTCTGCAGATTCGTATCAGTTCTCTTCATACGCTCATCAGTCGTTGCCATGGAATACAATGACTGATATAAGTAATTTGATGCCATTATCACAACCTCGCCATGAGGAAACAGCTTCTTTAACTGTGAGGAACTGGGGAAGATTTACCGGAGATCAGATACAAGAAGCAAACATCACGCCTACAATTGATAATTCCGTTCAACAAGGTTATGCTAATGCTTCACAGTTTCCTGGTATCAAAACAATAGACAGTGGCATGCCTATAAATTTCCAGAGAGCCGATTCAGACAATTATATTTTAACTTCACTGCATAATAGATCAGACTGGCCAATGTCAACCTCTTCATTCGGTTTGACACCAGGCCAGATATCCACTATGCCTGCCGTGCCTTCTTTTCCTTCCGTTACTCCTTATGTTGAGCCTGAAGACGCTGCCAAGCTTAATGGTAAGGAAAATCAGAGAAGCTGA 1536 0.4258 MWELLVDRSNTEEVFKVEGDYRTEMNFQEEVHPVAFNDIKSANLYSQRASSSNPQNNSSFHKEMAIGDNTANLSTEVDDILQLASMEQDGDAAINDILGLTFEEASPSSTNLDGLFPSDINNIARSSSSQVESQAATPSFSDHGQARITSLYTNTESHVDLSKCRVNSSSAGKDFGASNVNTNKRRKKPVSTSESQDCKGCNCEMSRCLKLYCECFKAGSYCDGQCSCEVCYNRSDYEDIVTDKRQIIETRNPLAFAPKVVYNFASTKEEENSATSFAAKHRKGCNCKKSKCSKKYCECFQAKVGCSFGCRCVDCQNSFGIRTENPRSEKWKLPHESSHATECRPQCMNIGSTNLLSADSYQFSSYAHQSLPWNTMTDISNLMPLSQPRHEETASLTVRNWGRFTGDQIQEANITPTIDNSVQQGYANASQFPGIKTIDSGMPINFQRADSDNYILTSLHNRSDWPMSTSSFGLTPGQISTMPAVPSFPSVTPYVEPEDAAKLNGKENQRS* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00058 511 ProSiteProfiles CRC domain profile. 197 320 IPR005172 -
Pte19g00058 511 MobiDBLite consensus disorder prediction 175 195 - -
Pte19g00058 511 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 283 318 IPR005172 -
Pte19g00058 511 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 199 234 IPR005172 -
Pte19g00058 511 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 119 496 IPR044522 GO:0003700
Pte19g00058 511 SMART CXC_2 196 237 IPR033467 -
Pte19g00058 511 SMART CXC_2 280 321 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00058 Pte-Chr19 523690 526929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00058 179 320 CPP Transcription Factor Family AT4G14770 52.778 1.58e-47 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Pte19g00058 TCR 4.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00058 K21776 - qsa:O6P43_027846 234.958