Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00052 ATGGCTGTGAACAGGATGGGTGAAGTCAAGGATACTGAGGTTTATGAGGATGAGCTTCTCGACTACGAGGAGGAAGATGAGAAGATCCCTGATTCTGTCGGCAAGCCCGGCACTGGTGCCGCCCAAAAGGGTTATGTTGGGATTCATAGTTCCGGATTCCGTGATTTCCTGCTGAAACCAGAGCTTCTTCACGCTATTATGGATTCTGGATTTGAGCATCCATCAGAAGGCAAGCTTTTCATCAATTGCTCGATGCAACATGAGTGTATCCCTCAAGCTATTTTGGGCATGGATGTCATTTGTCAAGCAAAATCTGGGATGGGGAAGACTGCCGTTTTTGTCCTGTCGACCCTACAGCAAATTGATCCTGTTCCTGGCCAAGTTGTTGCGCTTGTTCTCTGTCACACCAGAGAGTTGGCATACCAGATCTGCCATGAATTTGAAAGGTTCAGCACATACTTACCTGAAGCAAAGATTGCTGTTTTTTATGGTGGTGTCAATATTAAGGTCCACAAAGATTTGCTGAAAAATGAGTGTCCCCATATTGTTGTTGGGACGCCTGGAAGGATATTGGCTCTGGCTAGGGATAAAGATCTTAGCTTGAAGAATGTGAGGCATTTTATCCTTGACGAGTGTGACAAGATGCTTGAATCACTTGATATGAGAAGAGATGTGCAGGAAATATTCAAGCTTACTCCTCACGACAAACAAGTGATGATGTTCTCTGCTACTCTGAGCAAAGATATTCGTCCCGTGTGCAAGAAATTCATGCAAGATCCCATGGAAATTTATGTGGATGATGAGGCGAAGTTGACTCTCCATGGTCTAGTCCAGCATTACATCAAATTGAAGGAGATAGAGAAGAATCGCAAGTTGAATGATCTTCTAGATGCCCTGGACTTCAATCAAGTAGTGATTTTTGTGAAAAGTGTAAGTAGAGCGGCAGAACTGAATAAGTTGCTTGTGGAATGCAACTTCCCTGCTATATGCATTCATTCTGGGATGTCACAGGAAGAAAGATTGAAACGATATAAAGGTTTCAAGGAAGGAAAACATCGAATTCTGGTGGCAACAGATTTGGTTGGTAGGGGTATCGACATAGAGCGAGTCAATATTGTTATCAACTATGACATGCCTGATTCTGCCGATACTTATCTACACAGGGTCGGTAGAGCTGGGAGATTTGGTACCAAGGGGCTTGCCATTACCTTCGTTTCCTCTACAGCTGATTCTGACATTCTGAATATGTGCCAAGCTGATGATGAGTTTCGAGTTGTACACTTATGTAGGAGTCTGTCTTTGGGAGAAATGGGGTTGAAATTGGGAATCAATTTTAGCCATCTGTAG 1347 0.435 MAVNRMGEVKDTEVYEDELLDYEEEDEKIPDSVGKPGTGAAQKGYVGIHSSGFRDFLLKPELLHAIMDSGFEHPSEGKLFINCSMQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVVALVLCHTRELAYQICHEFERFSTYLPEAKIAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKDIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEIEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPAICIHSGMSQEERLKRYKGFKEGKHRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTADSDILNMCQADDEFRVVHLCRSLSLGEMGLKLGINFSHL* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00052 448 FunFam DEAD-box ATP-dependent RNA helicase 272 436 - -
Pte19g00052 448 CDD DEADc_DDX39 50 265 - -
Pte19g00052 448 Pfam DEAD/DEAH box helicase 84 249 IPR011545 GO:0003676|GO:0005524
Pte19g00052 448 SMART ultradead3 77 279 IPR014001 -
Pte19g00052 448 Pfam Helicase conserved C-terminal domain 289 396 IPR001650 -
Pte19g00052 448 Gene3D - 272 428 IPR027417 -
Pte19g00052 448 CDD SF2_C_DEAD 276 405 - -
Pte19g00052 448 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 90 263 IPR014001 -
Pte19g00052 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 409 IPR027417 -
Pte19g00052 448 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 51 419 - -
Pte19g00052 448 SMART helicmild6 315 396 IPR001650 -
Pte19g00052 448 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 291 440 IPR001650 -
Pte19g00052 448 Gene3D - 47 271 IPR027417 -
Pte19g00052 448 FunFam DEAD-box ATP-dependent RNA helicase 56-like 40 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00052 Pte-Chr19 496766 500424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00052 6 418 Eukaryotic Initiation Factors Gene Family AT5G11200 79.075 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00052 K12812 - gmx:100785358 733.791