Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00050 ATGGTACAATCAAAGAAATACAGAGGAGTTAGGCAACGCCACTGGGGCTCGTGGGTTTCAGAGATACGCCACCCCTTAATGAAAAGAAGAGTGTGGCTTGGAACGTTTGAAACTGCTGAAGAAGCTGCTCAAGCATACGATGAGGCAGCAATTTTGATGAGCGGTCCAAATGCAAAAACAAATTTTCCGGTGACCAATAATCAAATAGGGAATAACAGTAAACTGCCTTATTCTCATTCTTCACCTTCGTCTCCATCCACACTGATGGTTGAGCTTGAAAAGCACAATCACAACACGCAGAAGATGGAGCAGCCATTGGATCAACATGAGAAATCGGATGAGGAGGAAAAGGTTGCATTGCAGATGATTGAAGAACTTCTCAATAGGAATAATTAA 396 0.4268 MVQSKKYRGVRQRHWGSWVSEIRHPLMKRRVWLGTFETAEEAAQAYDEAAILMSGPNAKTNFPVTNNQIGNNSKLPYSHSSPSSPSTLMVELEKHNHNTQKMEQPLDQHEKSDEEEKVALQMIEELLNRNN* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00050 131 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Pte19g00050 131 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Pte19g00050 131 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Pte19g00050 131 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 101 - -
Pte19g00050 131 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Pte19g00050 131 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Pte19g00050 131 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Pte19g00050 131 MobiDBLite consensus disorder prediction 65 87 - -
Pte19g00050 131 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Pte19g00050 131 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Pte19g00050 131 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00050 Pte-Chr19 488294 489163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00050 1 73 AP2-EREBP Transcription Factor Family AT1G15360 80.822 9.79e-43 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte19g00050 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00050 - - qsa:O6P43_018032 147.902