Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00043 ATGGCTTTTTTCATGACCTTTTGTTGCGGAAAGGGTTCCGATCGGAAAGAACGAGGGAAGAAAAAACCAACATGGAGAGTGTTTTCCTTAAAGGAACTACATGCAGCTACAAACAATTTCAACTATGATAACAAGCTCGGAGAAGGAGGATTTGGAAGTGTTTATTGGGGTCAGCTTTGGGATGGGTCGCAGATTGCAGTGAAAAGATTAAAAGTTTGGAGCAACAAAGCAGACATGGAATTTGCTGTTGAGGTTGAGATATTGGCAAGAGTAAGGCATAAAAACCTACTTAGTTTACGAGGCTACTGTGCAGAAGGTCAAGAGCGTTTAATTGTATACGATTATATGCCAAACCTGAGCTTGCTTTCGCATCTACATGGTCAACACTCAGCAGAATGTCTTCTGGATTGGAAAAGACGGATGATTATAGCAATTGGATCTGCTGAGGGAATCGCCTACCTTCATCACAGTGCAACCCCACATATTATCCATAGAGATATTAAAGCAAGCAATGTATTGCTGGATTCAGATTTTCAGGCCCAGGTTGCTGATTTTGGATTTGCGAAACTTATCCCTGATGGAGCTACTCATGTTACCACTAGAGTTAAGGGCACTCTAGGCTACCTTGCCCCTGAGTATGCGATGTTTGGTAAGGCATCAGAAAGTTGTGATGTTTACAGTTTTGGCATTCTCTTACTGGAACTTGCCAGTGGCAGGAAACCCATTGAAAAAGTGAGCTCCAACATGAAGCGCTCAATAACCGACTGGGCGCTTCCTTTGGCATGTGAGAGAAAGTTTGGGGAGCTTGCAGATCCAAAACTAAATGGGGTTTACAAAGAGGACGAGTTTAAAAGAATTATATTGGTAGCACTTGTTTGTGCTCAAAATCAACCTGAGAAAAGACCTACCACACTTGAGGTAGTGGAGCTCCTAAAGGGAGAATCGCAGGAGCAGATATCTGAATTGGAAAACAACGAACTGTTTAGAAGCCCAAGGGCTACAGATTACAATGAGTTTATGTCTACTGCAGATAACAGCACCGAAATCATATCAGCGCAGAAAGATGTAAAAGGTGAGGTTAAAGAGAATGCTTTATAG 1098 0.4226 MAFFMTFCCGKGSDRKERGKKKPTWRVFSLKELHAATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFAVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGQHSAECLLDWKRRMIIAIGSAEGIAYLHHSATPHIIHRDIKASNVLLDSDFQAQVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMFGKASESCDVYSFGILLLELASGRKPIEKVSSNMKRSITDWALPLACERKFGELADPKLNGVYKEDEFKRIILVALVCAQNQPEKRPTTLEVVELLKGESQEQISELENNELFRSPRATDYNEFMSTADNSTEIISAQKDVKGEVKENAL* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00043 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Pte19g00043 365 PANTHER OS01G0253100 PROTEIN 20 317 - -
Pte19g00043 365 Pfam Protein kinase domain 41 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte19g00043 365 SUPERFAMILY Protein kinase-like (PK-like) 23 311 IPR011009 -
Pte19g00043 365 Gene3D Phosphorylase Kinase; domain 1 10 115 - -
Pte19g00043 365 FunFam PTI1-like tyrosine-protein kinase At3g15890 116 327 - -
Pte19g00043 365 SMART serkin_6 40 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte19g00043 365 Gene3D Transferase(Phosphotransferase) domain 1 116 329 - -
Pte19g00043 365 CDD STKc_IRAK 46 313 - -
Pte19g00043 365 ProSiteProfiles Protein kinase domain profile. 40 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte19g00043 365 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524
Pte19g00043 365 Coils Coil 305 325 - -
Pte19g00043 365 FunFam PTI1-like tyrosine-protein kinase At3g15890 12 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00043 Pte-Chr19 449678 453003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00043 28 339 Trihelix Transcription Factor Family AT1G70460 48.101 7.27e-94 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Pte19g00043 Pkinase 4.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00043 - - pop:7475672 627.091