Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00041 ACTGTGGTTTGTGCTTCTGGCGATTACTATTCTACTCTTGGGATTTCCAAATCAGCTAGTAGTAAAGAAATCAAAGCTGCTTATCGAAGGTTAGCTCGTCAGTTCCACCCTGATGTGAACAAGGAACCTGGAGCAACCGAAAAGTTTAAAGAGATTAGTGCTGCTTATGAGGTGCTATCAGATGATAAAAAGAGGGCTTTGTATGACCAATATGGTGAGGCTGGAATTAAAAGTGCTGTTGGAGGAGGATCAAATGCATACACGACAAACCCTTTTGATTTATTTGAGGCCTTTTTCGGCTCAAATATAGGAGGCTTCTCTGGAATGGATCCTACTGGATTTGGAACAAGCCGCCGTAGCACCGTCGCTAAGGGTGAAGATATTCGCTATGATATCTCGTTGGAATTTTATGAGGCTATATTTGGAGCAGAGAAAGAATTCGAGCTCTCACATCTAGAAACATGTGAAGCCTGCGCTGGCACTGGAGCAAGGGCTGGCACAAAGATGAGAATATGTTCAACATGTGGTGGAAGAGGTCAGGTGATGAGAACTGAGCAGACTCCTTTTGGATTGTTTTCTCAGGTAGTGTCTGTATGTCCAACTTGTGGTGGGAATGGTGAAGTCATATCTGAATACTGCCGTAAATGCAATGGTGAAGGTCGCCTACGTGTTAAGAAAAATATAAAAGTCAAGGTTCCTCCTGGAGTCACCTCTGGCAGCATTCTCAGAGTGGCTGCAGAGGGTGATGCTGGTTTAAGAGGGGGTCCTCCTGGAGATCTTTTTGTATATCTTGACGTGGAAGAGGTAGCGGGTATACAGAGAGATGGCTTAAATCTCTGCTCAAACATATCTATCAGTTACCTTGATGCTATATTAGGGGCCGTTGTCAAGGTAAAGACTGTTGAAGGGATCGCTGAACTACAAATCCCTCCTGGTACCCAACCTGGAGATGTACTTGTCCTTGCAAAGAAGGGTGCACCAAAATTAAACAAACCGTCCATTCGCGGAGACCATCTATTTACTGTCAAGGTTACAATACCAAACCGCGTG 1050 0.4448 TVVCASGDYYSTLGISKSASSKEIKAAYRRLARQFHPDVNKEPGATEKFKEISAAYEVLSDDKKRALYDQYGEAGIKSAVGGGSNAYTTNPFDLFEAFFGSNIGGFSGMDPTGFGTSRRSTVAKGEDIRYDISLEFYEAIFGAEKEFELSHLETCEACAGTGARAGTKMRICSTCGGRGQVMRTEQTPFGLFSQVVSVCPTCGGNGEVISEYCRKCNGEGRLRVKKNIKVKVPPGVTSGSILRVAAEGDAGLRGGPPGDLFVYLDVEEVAGIQRDGLNLCSNISISYLDAILGAVVKVKTVEGIAELQIPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRV 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00041 350 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 142 223 IPR036410 -
Pte19g00041 350 SUPERFAMILY HSP40/DnaJ peptide-binding domain 123 267 IPR008971 GO:0006457|GO:0051082
Pte19g00041 350 ProSitePatterns Nt-dnaJ domain signature. 49 68 IPR018253 -
Pte19g00041 350 CDD DnaJ_zf 155 220 IPR001305 GO:0031072|GO:0051082
Pte19g00041 350 FunFam Putative Mitochondrial DnaJ chaperone 214 262 - -
Pte19g00041 350 Pfam DnaJ C terminal domain 128 347 IPR002939 -
Pte19g00041 350 PRINTS DnaJ domain signature 28 43 IPR001623 -
Pte19g00041 350 PRINTS DnaJ domain signature 10 28 IPR001623 -
Pte19g00041 350 PRINTS DnaJ domain signature 44 64 IPR001623 -
Pte19g00041 350 PRINTS DnaJ domain signature 64 83 IPR001623 -
Pte19g00041 350 CDD DnaJ_C 126 349 - -
Pte19g00041 350 Hamap Chaperone protein DnaJ [dnaJ]. 5 350 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Pte19g00041 350 Pfam DnaJ domain 8 69 IPR001623 -
Pte19g00041 350 SMART dnaj_3 7 64 IPR001623 -
Pte19g00041 350 Pfam DnaJ central domain 155 220 IPR001305 GO:0031072|GO:0051082
Pte19g00041 350 ProSiteProfiles dnaJ domain profile. 8 72 IPR001623 -
Pte19g00041 350 SUPERFAMILY HSP40/DnaJ peptide-binding domain 273 348 IPR008971 GO:0006457|GO:0051082
Pte19g00041 350 FunFam Chaperone protein dnaJ A6 chloroplastic 5 111 - -
Pte19g00041 350 Gene3D - 155 220 - -
Pte19g00041 350 CDD DnaJ 8 61 IPR001623 -
Pte19g00041 350 Gene3D - 125 262 - -
Pte19g00041 350 FunFam Chaperone protein dnaJ A6 chloroplastic 155 220 - -
Pte19g00041 350 Gene3D DnaJ domain 5 110 IPR036869 -
Pte19g00041 350 Gene3D - 272 350 - -
Pte19g00041 350 NCBIfam molecular chaperone DnaJ 8 349 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Pte19g00041 350 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 5 350 - -
Pte19g00041 350 ProSiteProfiles Zinc finger CR-type profile. 142 225 IPR001305 GO:0031072|GO:0051082
Pte19g00041 350 SUPERFAMILY Chaperone J-domain 5 114 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00041 Pte-Chr19 437556 442769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00041 9 115 C2H2 Transcription Factor Family AT1G74250 41.228 3.46e-12 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g00041 19 437556 442769 Pte19g00041 19 437556 442769 RCT