Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00027 ATGGACGTCGACCTTGGAAAACCAAAGCTATGTCTTTCTGAAACTAAAGCCGCAGTCTCAGTTCCAGATAGTCCCCTCAGCTTAAATATTCCCTTTGATCCCTCCAGGGTTGAGCAAAGCCAATTCTTGAAGCAATGCCAGAAACACTCTCTTGATTCAGCTTCTCAAGTTGTACTTGTGGATCTAAGAGTCTCCGGTAAAGATTCAAATGGTGAGCATTCAAAGCAAGAACTCAATCTCATTGACTGTTTTGATATGAATTCAACAAGGAACCCTTCAGACTATACTGAAGGCAATGAACTGGAGCCTCGTATTTTCTCATGCAACTATTGCCAAAGAAAGTTTTATAGTTCACAGGCACTCGGAGGACACCAGAACGCACATAAGCGCGAAAGAACTCTAGAAAAAAGAGGTCAGAAACTTTGTTCTGCAGCGTCTAAGGATTTTGGTCACAGGTTCTCCAGCGTTGCTTCTATGCCTTTGCATGGCTCATATGGCCGATCACTTGGGATTCAGGTGCATTCTATGATTAGCAAGCCTTCTTATCAAAATGGATGGCACTGGAGGCGCCCCATTGATTCACAGCCAGAAACCGCAAAGCTCACTCCGGTAAACTTGCAAGTAGAAGAAAGAGGATCGTCTATTACAGGTGGAATTTCAAGATTCGATTGTGTTCCAAAGATATTTACGAAAACTGAGGGAACTGGAGGTTACTGGTTGAGCAGCGCAAGCCACTTGAAGACCAAAACAGATGAGCTACAGAAGCTTGACTTGTCCCTTAAACTCTGA 789 0.4373 MDVDLGKPKLCLSETKAAVSVPDSPLSLNIPFDPSRVEQSQFLKQCQKHSLDSASQVVLVDLRVSGKDSNGEHSKQELNLIDCFDMNSTRNPSDYTEGNELEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLEKRGQKLCSAASKDFGHRFSSVASMPLHGSYGRSLGIQVHSMISKPSYQNGWHWRRPIDSQPETAKLTPVNLQVEERGSSITGGISRFDCVPKIFTKTEGTGGYWLSSASHLKTKTDELQKLDLSLKL* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00027 262 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Pte19g00027 262 SUPERFAMILY beta-beta-alpha zinc fingers 103 134 IPR036236 -
Pte19g00027 262 Gene3D Classic Zinc Finger 89 156 - -
Pte19g00027 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Pte19g00027 262 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 38 262 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00027 Pte-Chr19 354769 355872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00027 1 263 C2H2 Transcription Factor Family AT5G10970 40.278 4.02e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte19g00027 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00027 - - qsa:O6P43_017957 267.7