Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00019 ATGTTTGATAGTGGTTACAAATCACAGCATATTGATGGCCAGAAGGAGAAATTTGTAAGGTTGGACGACATGAACAACTCTCCAGTGCCAGTGCCAACAAACGAATATGGGAAGAAAGTGACATTCAATTTAGAGGGTTTGCCCTTACCTGGACGTGGAAAAAAGAAGGCGTCTAAATCATTCAGGTTAGGAGTGTTGAAGGGATCAGATGGACTCAAGAGTTTCGGTTGCTCATTGAGAACTGGGGTCACCAAAGCAGTATTCCCAGAAGATTTGAAAGCGTCTGAAAAAGGAATATTTGATCCTCAAAGCAAAACTCTGATGTACTATAATAGAATGTTTGAGCTAATTTGTATTTTGCCAGTTAGTATCGATCCTTTGTTCGTCTATGTTCCTATCTTCAACCACAGTTCTTATTGCATTGCTATAGATACCAATCTAGCCAAAATAGCTGTTTGGTGTCGAAGTGTATGCGATTGCTTGTATCTCTTTCGCATTGCTATACAGTTTCGAACAGCTTTCGTCGCACCCTCATCTCGAGTTTTTGGACGAGGTGAACTTGTCATAGACCCTGCGCAGATAGCTAAGAGATATTTACGGCGTTTCTTTATAATGGATTTAGTTTCAGTGCTTCCCTTACCACAGGTAACTGGGTCCATCTGGTATTTACTACCTGTAGAGCGGAACGAGACATGCTGGCGCCATGCTTGTCGGCAGACTCCTGTATGTTTTGGGTATTTCTTGTACTGTGGCAATAAGCACATGGAAGGCTACCAACAGTGGAAAAATGTGAGTCAAGATGTTCTTAGTAAAAGCTGTGATGTGGTTGACGATGAGTCAGAATTCAATTATGGGATATACAAAAAGGCAATAGGATCTAAAATTGTTACGATCGACACTTTCATCAAGAAGTTAAGTTTCTGTTTGTGGTGGGGCTTACAAAATTTGAGTACACTTGGTCAGGGACTCTATACGAGTATATATCCTGGAGAGGTCAGGGACTCTATACGAGTATATACTCTATACGAGTATATATCCTGGAGAACTAAAAGGCGTGATTCTGAACAATGGATGCACCATCGTTTGCTTCCACCAGAACTAAGGGGAAGGGTCTGGCGCTATGATCAATACAAGTGGCTAGAAACTCGTGGAGTAGATGAAGAGAGCTTGGTGAAAATTCTGTCAAAGGACTTGAGAAGAGATATCAAACGACATCTATGTTTGAATTTAGTGAGAAGGGTTCCTCTGTTTGCTAATATGGATGAACAGTTGTTAGATGCGGTCTGTGGGCGATTGAAACCAAGTTTATATACAGATAATACATACATTGTTAGGGAAGGAGATCCAGTTGATGAGATGCTCTTCGTTATACGTGGTCTTATGGAGAGTGTTACCACAGATGGTGGAAGAAGTGGATTTTTCAACAGAGGGATACTCAAAGAATCTAACTTCTGCGGAGACAAGCTATTAACCTGGGCATTGGACCCAAAAGCCGACTCTAACTTGCCCTTATCCACTAAGACAGTAAGAGCTTTGACAAAGGTGGAGGCATTTGCTCTCGAAGTAGAAGAGCTAAGGTTTATTACTAGCCAGTTTTAG 1599 0.414 MFDSGYKSQHIDGQKEKFVRLDDMNNSPVPVPTNEYGKKVTFNLEGLPLPGRGKKKASKSFRLGVLKGSDGLKSFGCSLRTGVTKAVFPEDLKASEKGIFDPQSKTLMYYNRMFELICILPVSIDPLFVYVPIFNHSSYCIAIDTNLAKIAVWCRSVCDCLYLFRIAIQFRTAFVAPSSRVFGRGELVIDPAQIAKRYLRRFFIMDLVSVLPLPQVTGSIWYLLPVERNETCWRHACRQTPVCFGYFLYCGNKHMEGYQQWKNVSQDVLSKSCDVVDDESEFNYGIYKKAIGSKIVTIDTFIKKLSFCLWWGLQNLSTLGQGLYTSIYPGEVRDSIRVYTLYEYISWRTKRRDSEQWMHHRLLPPELRGRVWRYDQYKWLETRGVDEESLVKILSKDLRRDIKRHLCLNLVRRVPLFANMDEQLLDAVCGRLKPSLYTDNTYIVREGDPVDEMLFVIRGLMESVTTDGGRSGFFNRGILKESNFCGDKLLTWALDPKADSNLPLSTKTVRALTKVEAFALEVEELRFITSQF* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00019 532 SMART cnmp_10 416 530 IPR000595 -
Pte19g00019 532 SUPERFAMILY Voltage-gated potassium channels 102 330 - -
Pte19g00019 532 Pfam Ion transport protein 112 215 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pte19g00019 532 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 216 532 - -
Pte19g00019 532 FunFam Cyclic nucleotide-gated ion channel 1 343 407 - -
Pte19g00019 532 CDD CAP_ED 416 528 IPR000595 -
Pte19g00019 532 Gene3D Jelly Rolls 414 532 IPR014710 -
Pte19g00019 532 FunFam Cyclic nucleotide-gated ion channel 1 414 532 - -
Pte19g00019 532 Gene3D Helix hairpin bin 330 407 - -
Pte19g00019 532 ProSiteProfiles cAMP/cGMP binding motif profile. 416 532 IPR000595 -
Pte19g00019 532 SUPERFAMILY cAMP-binding domain-like 347 531 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00019 Pte-Chr19 280385 284900 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00019 215 532 Ion Channels AT1G19780 64.035 3.45e-150 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00019 K05391 - mnt:112093642 626.706